BLAST Results
BLASTN 2.2.28+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: JrSerr_genome.fa 73 sequences; 534,671,929 total letters Query= Length=1347 Score E Sequences producing significant alignments: (Bits) Value lcl|Jr2D 719 0.0 lcl|Jr2S 554 6e-156 lcl|Jr6D 343 2e-92 lcl|Jr3S 71.6 2e-10 lcl|Jr1D 41.0 0.33 lcl|Jr8D 39.2 1.1 lcl|Jr7S 39.2 1.1 lcl|Jr7D 39.2 1.1 lcl|Jr8S 37.4 4.0 lcl|Jr5D 37.4 4.0 lcl|Jr3D 37.4 4.0 >Query1 on lcl|Jr2D| Query1 on lcl|Jr2D Length=43955564 Score = 719 bits (796), Expect = 0.0 Identities = 398/398 (100%), Gaps = 0/398 (0%) Strand=Plus/Plus Query 301 AGGGTGCTGATAAATATTGAGATTTTTGGCTTTCAGATTGACCCTGCAAAGTACAAAAGC 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 316842 AGGGTGCTGATAAATATTGAGATTTTTGGCTTTCAGATTGACCCTGCAAAGTACAAAAGC 316901 Query 361 ATCTCATCTGGGTTTGGAGTGTTGCTGAAGGATCAGGGCGTCAGAGGCTTCTTCAGGGGT 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 316902 ATCTCATCTGGGTTTGGAGTGTTGCTGAAGGATCAGGGCGTCAGAGGCTTCTTCAGGGGT 316961 Query 421 TGGGTACCAACCTTGCTTGGCTACAGTGCTCAGGGTGCTTGCAAGTTTGGATTCTACGAA 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 316962 TGGGTACCAACCTTGCTTGGCTACAGTGCTCAGGGTGCTTGCAAGTTTGGATTCTACGAA 317021 Query 481 TTCTTTAAGAAGTACTACTCTGACATTGCTGGACCTGAGTATGCATCCAAGTACAAGACC 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 317022 TTCTTTAAGAAGTACTACTCTGACATTGCTGGACCTGAGTATGCATCCAAGTACAAGACC 317081 Query 541 TTGATCTATCTTGCTGGTTCTGCATCTGCTGAGGTCATTGCAGATATTGCACTTTGCCCT 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 317082 TTGATCTATCTTGCTGGTTCTGCATCTGCTGAGGTCATTGCAGATATTGCACTTTGCCCT 317141 Query 601 TTCGAGGCAGTGAAGGTCCGAGTTCAAACACAGCCTGGTTTTGCTAGAGGTCTTTCTGAT 660 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 317142 TTCGAGGCAGTGAAGGTCCGAGTTCAAACACAGCCTGGTTTTGCTAGAGGTCTTTCTGAT 317201 Query 661 GGGCTTCCTAAGTTTGTTAAATCTGAAGGCGTTCTGGG 698 |||||||||||||||||||||||||||||||||||||| Sbjct 317202 GGGCTTCCTAAGTTTGTTAAATCTGAAGGCGTTCTGGG 317239 Score = 547 bits (606), Expect = 9e-154 Identities = 303/303 (100%), Gaps = 0/303 (0%) Strand=Plus/Plus Query 1 ATGGCTCTCTCAGAAAAAACATCGCGTCAGTCTCTGATCCCCAGTTTCCTCTACTCTTCT 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 314649 ATGGCTCTCTCAGAAAAAACATCGCGTCAGTCTCTGATCCCCAGTTTCCTCTACTCTTCT 314708 Query 61 TCTCTCTCCCACAAAACCCTACCTCTCGATAATATCATTcccccccTAATCTTAACACCC 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 314709 TCTCTCTCCCACAAAACCCTACCTCTCGATAATATCATTCCCCCCCTAATCTTAACACCC 314768 Query 121 TCTTCTCTCAACCCTCGTCTCCCAGTAGCAACGTCTTTGTTCCCGCCCCTAGCGAGCCTT 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 314769 TCTTCTCTCAACCCTCGTCTCCCAGTAGCAACGTCTTTGTTCCCGCCCCTAGCGAGCCTT 314828 Query 181 CCAAGAAGATCGAGATGTACTCCCCACAATTCTACGCCGCCTGTACCGTCGGAGGCATCC 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 314829 CCAAGAAGATCGAGATGTACTCCCCACAATTCTACGCCGCCTGTACCGTCGGAGGCATCC 314888 Query 241 TCAGCTGTGGTCTCACTCACATGGCCGTCACTCCCCTCGACCTCGTCAAATGCAATATGC 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 314889 TCAGCTGTGGTCTCACTCACATGGCCGTCACTCCCCTCGACCTCGTCAAATGCAATATGC 314948 Query 301 AGG 303 ||| Sbjct 314949 AGG 314951 Score = 392 bits (434), Expect = 5e-107 Identities = 220/222 (99%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 737 TTCCATATACAATGATGAAGTTTGCATCTTTTGAGGCCATTGTGGAGAATATTTATAAGT 796 || || |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 318614 TTGCAGATACAATGATGAAGTTTGCATCTTTTGAGGCCATTGTGGAGAATATTTATAAGT 318673 Query 797 ATGCCATCCCCACTCCGAAGGACCAGTGTAGTAAAAGTCTGCAGCTGGGTGTGAGTTTTG 856 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 318674 ATGCCATCCCCACTCCGAAGGACCAGTGTAGTAAAAGTCTGCAGCTGGGTGTGAGTTTTG 318733 Query 857 CTGGTGGATATGTGGCTGGTATATTCTGTGCTATTGTGTCTCATCCTGCTGACAATCTTG 916 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 318734 CTGGTGGATATGTGGCTGGTATATTCTGTGCTATTGTGTCTCATCCTGCTGACAATCTTG 318793 Query 917 TCTCTTTCCTCAACAATGCCAAAGGGGCAACTGTTGGTGATG 958 |||||||||||||||||||||||||||||||||||||||||| Sbjct 318794 TCTCTTTCCTCAACAATGCCAAAGGGGCAACTGTTGGTGATG 318835 Score = 266 bits (294), Expect = 5e-69 Identities = 147/147 (100%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 1201 GATAACCTAAATGCTCCAGACAAAGGCCGAGGAGGAGATGGAGGTTTTGGTGGCGGAGTC 1260 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 320022 GATAACCTAAATGCTCCAGACAAAGGCCGAGGAGGAGATGGAGGTTTTGGTGGCGGAGTC 320081 Query 1261 CAAAATGGAGGTATTCTTCTTGACATTGCTTCTTTACGGTGTGGCCACCCTTATCTTCAC 1320 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 320082 CAAAATGGAGGTATTCTTCTTGACATTGCTTCTTTACGGTGTGGCCACCCTTATCTTCAC 320141 Query 1321 CCAAGGTTTCCTTTTCAACTCAGGTGA 1347 ||||||||||||||||||||||||||| Sbjct 320142 CCAAGGTTTCCTTTTCAACTCAGGTGA 320168 Score = 228 bits (252), Expect = 1e-57 Identities = 126/126 (100%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 958 GCTGTGAAGAAGCTAGGTTTGTGGGGTCTCTTTACCCGTGGGCTTCCTCTCCGTATTGTC 1017 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 318918 GCTGTGAAGAAGCTAGGTTTGTGGGGTCTCTTTACCCGTGGGCTTCCTCTCCGTATTGTC 318977 Query 1018 ATGATTGGAACTCTTACCGGAGCTCAGTGGGGAATCTATGACGCCTTCAAAGTTTTCGTG 1077 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 318978 ATGATTGGAACTCTTACCGGAGCTCAGTGGGGAATCTATGACGCCTTCAAAGTTTTCGTG 319037 Query 1078 GGATTG 1083 |||||| Sbjct 319038 GGATTG 319043 Score = 118 bits (130), Expect = 1e-24 Identities = 72/75 (96%), Gaps = 1/75 (1%) Strand=Plus/Plus Query 1139 AGCTTATGGGGTTTTTCGTTGCCTCCCAAGATTTTGGAGTCGCGAGTTATTTTATGCCCT 1198 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 319755 AGCTTATGGGGTTTTTCGTTGCCTCCCAAGATTTTGGAGTCGCGAGTTATTTTATGCCCT 319814 Query 1199 ATGATAACCTAAATG 1213 ||| ||| |||||| Sbjct 319815 ATGGTAA-ATAAATG 319828 Score = 105 bits (116), Expect = 9e-21 Identities = 58/58 (100%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 1083 GCCAACCACTGGCGGGATCACTCCTGCTGCTGTCACCGCTGCAACTGAGGTTGCAAAG 1140 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 319138 GCCAACCACTGGCGGGATCACTCCTGCTGCTGTCACCGCTGCAACTGAGGTTGCAAAG 319195 Score = 82.4 bits (90), Expect = 1e-13 Identities = 47/48 (98%), Gaps = 0/48 (0%) Strand=Plus/Plus Query 698 GACTGTACAAGGGTCTAGTTCCTCTCTGGGGACGTCAGATTCCATATA 745 ||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 317330 GACTGTACAAGGGTCTAGTTCCTCTCTGGGGACGTCAGATTCCATGTA 317377 Score = 37.4 bits (40), Expect = 4.0 Identities = 31/37 (84%), Gaps = 1/37 (3%) Strand=Plus/Minus Query 886 GCTATTGTGTCTCATCCTGCTGACAATCTTGTCTCTT 922 |||||| | | | ||| || ||||||||||||||||| Sbjct 10310837 GCTATTCTATTT-ATCTTGGTGACAATCTTGTCTCTT 10310802 >Query1 on lcl|Jr2S| Query1 on lcl|Jr2S Length=37319718 Score = 554 bits (614), Expect = 6e-156 Identities = 346/372 (93%), Gaps = 0/372 (0%) Strand=Plus/Plus Query 319 GAGATTTTTGGCTTTCAGATTGACCCTGCAAAGTACAAAAGCATCTCATCTGGGTTTGGA 378 ||||||||| | ||||||||||||||||||| |||||||| ||||||||||| |||||| Sbjct 234566 GAGATTTTTAGTTTTCAGATTGACCCTGCAAGGTACAAAACGATCTCATCTGGTTTTGGA 234625 Query 379 GTGTTGCTGAAGGATCAGGGCGTCAGAGGCTTCTTCAGGGGTTGGGTACCAACCTTGCTT 438 ||| |||||||||| |||||| ||||||||||||||||||||||||| |||||||||||| Sbjct 234626 GTGCTGCTGAAGGAGCAGGGCATCAGAGGCTTCTTCAGGGGTTGGGTGCCAACCTTGCTT 234685 Query 439 GGCTACAGTGCTCAGGGTGCTTGCAAGTTTGGATTCTACGAATTCTTTAAGAAGTACTAC 498 || |||||||||||||||||| |||||||||||||||| |||||||||||||| |||||| Sbjct 234686 GGTTACAGTGCTCAGGGTGCTGGCAAGTTTGGATTCTATGAATTCTTTAAGAAATACTAC 234745 Query 499 TCTGACATTGCTGGACCTGAGTATGCATCCAAGTACAAGACCTTGATCTATCTTGCTGGT 558 ||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| Sbjct 234746 TCTGACATTGCTGGACCTGAGTATGCAACCAAGTACAAAACCTTGATCTATCTTGCTGGT 234805 Query 559 TCTGCATCTGCTGAGGTCATTGCAGATATTGCACTTTGCCCTTTCGAGGCAGTGAAGGTC 618 |||||||| |||||||||||||| || ||||| ||||||||||| ||||||||||||||| Sbjct 234806 TCTGCATCCGCTGAGGTCATTGCGGACATTGCTCTTTGCCCTTTTGAGGCAGTGAAGGTC 234865 Query 619 CGAGTTCAAACACAGCCTGGTTTTGCTAGAGGTCTTTCTGATGGGCTTCCTAAGTTTGTT 678 ||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||| Sbjct 234866 CGAGTTCAAACTCAGCCTGGTTTTGCCAGAGGTCTTTCAGATGGGCTTCCTAAGTTTGTT 234925 Query 679 AAATCTGAAGGC 690 || || |||||| Sbjct 234926 AAGTCGGAAGGC 234937 Score = 340 bits (376), Expect = 3e-91 Identities = 259/304 (85%), Gaps = 4/304 (1%) Strand=Plus/Plus Query 1 ATGGCTCTCTCAGAAAAAACATCGCGTCAGTCTCTGATCCCCAGTTTCCTCTACTCTTCT 60 |||||||||||||||| | |||||||||| ||||||||||| || |||||||||||||| Sbjct 233037 ATGGCTCTCTCAGAAAGATCATCGCGTCAATCTCTGATCCCGAGCTTCCTCTACTCTTCC 233096 Query 61 TCTCTCTCCCACAAAACCCTACCTCTCGATAATATCATTcccccc-cTAATCTTAACACC 119 | |||||||||||||||| |||||||||| ||||| | | | || ||||||||| Sbjct 233097 GCCGCCTCCCACAAAACCCTAGCTCTCGATAAAATCATGCTTGGCTCCAACCTTAACACC 233156 Query 120 CTCTTCTCTCAACCCTCGTCTCCCAGTAGCAACGTCTTTGTTCCCGCCCCTAGCGAGCCT 179 |||| | ||| || || || | || |||||||||||||| ||||| ||||||| Sbjct 233157 CTCT---CAGAACGTTCCTCGCCTACGAGGAACGTCTTTGTTCCTTCCCCTTCCGAGCCT 233213 Query 180 TCCAAGAAGATCGAGATGTACTCCCCACAATTCTACGCCGCCTGTACCGTCGGAGGCATC 239 ||||||||||||||||||| ||||||||||||||||||||||||||| |||| |||||| Sbjct 233214 ACCAAGAAGATCGAGATGTATTCCCCACAATTCTACGCCGCCTGTACCTTCGGCGGCATC 233273 Query 240 CTCAGCTGTGGTCTCACTCACATGGCCGTCACTCCCCTCGACCTCGTCAAATGCAATATG 299 |||||||| |||||||||||||||||||||||||||||||| || |||||||| |||||| Sbjct 233274 CTCAGCTGCGGTCTCACTCACATGGCCGTCACTCCCCTCGATCTTGTCAAATGTAATATG 233333 Query 300 CAGG 303 |||| Sbjct 233334 CAGG 233337 Score = 333 bits (368), Expect = 4e-89 Identities = 205/219 (94%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 740 CATATACAATGATGAAGTTTGCATCTTTTGAGGCCATTGTGGAGAATATTTATAAGTATG 799 || ||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| Sbjct 235736 CAGATACAATGATGAAGTTTGCATCTTTTGAGACCATTGTGGAATATATTTATAAGTATG 235795 Query 800 CCATCCCCACTCCGAAGGACCAGTGTAGTAAAAGTCTGCAGCTGGGTGTGAGTTTTGCTG 859 |||||||||| |||||||||||||||||||| ||||||||| |||||||||||||||| Sbjct 235796 CCATCCCCACATCGAAGGACCAGTGTAGTAAATCTCTGCAGCTTGGTGTGAGTTTTGCTG 235855 Query 860 GTGGATATGTGGCTGGTATATTCTGTGCTATTGTGTCTCATCCTGCTGACAATCTTGTCT 919 |||||||||||||||| | || |||||||| |||||||||||||||||||||||||||| Sbjct 235856 GTGGATATGTGGCTGGCGTGTTTTGTGCTATAGTGTCTCATCCTGCTGACAATCTTGTCT 235915 Query 920 CTTTCCTCAACAATGCCAAAGGGGCAACTGTTGGTGATG 958 ||||||||||||||||||||||||||||||||||||||| Sbjct 235916 CTTTCCTCAACAATGCCAAAGGGGCAACTGTTGGTGATG 235954 Score = 210 bits (232), Expect = 3e-52 Identities = 122/126 (97%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 958 GCTGTGAAGAAGCTAGGTTTGTGGGGTCTCTTTACCCGTGGGCTTCCTCTCCGTATTGTC 1017 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| Sbjct 236039 GCTGTGAAGAAGCTAGGTTTGTGGGGTCTCTTTACTCGTGGGCTTCCTCTCCGTATCGTC 236098 Query 1018 ATGATTGGAACTCTTACCGGAGCTCAGTGGGGAATCTATGACGCCTTCAAAGTTTTCGTG 1077 ||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| Sbjct 236099 ATGATTGGAACTCTTACTGGAGCTCAGTGGGGAATCTATGATGCCTTCAAAGTTTTCGTG 236158 Query 1078 GGATTG 1083 |||||| Sbjct 236159 GGATTG 236164 Score = 154 bits (170), Expect = 2e-35 Identities = 122/147 (83%), Gaps = 11/147 (7%) Strand=Plus/Plus Query 1201 GATAACCTAAATGCTCCAGACAAAGGCCGAGGAGGAGATGGAGGTTTTGGTGGCGGAGTC 1260 ||||||| |||| |||||||||| ||| ||| ||||||||||||||| |||||||||||| Sbjct 33264091 GATAACCCAAATACTCCAGACAACGGCAGAGTAGGAGATGGAGGTTT-GGTGGCGGAGTC 33264149 Query 1261 CAAAATGGA----------GGTATTCTTCTTGACATTGCTTCTTTACGGTGTGGCCACCC 1310 |||||| |||||||||||||| |||||||||| |||||||||||| | Sbjct 33264150 GGAAATGGGAGCAGATACGGGTATTCTTCTTGATATTGCTTCTTCACGGTGTGGCCATTC 33264209 Query 1311 TTATCTTCACCCAAGGTTTCCTTTTCA 1337 |||||||||||| |||||||||| ||| Sbjct 33264210 TTATCTTCACCCGAGGTTTCCTTCTCA 33264236 Score = 64.4 bits (70), Expect = 3e-08 Identities = 37/38 (97%), Gaps = 0/38 (0%) Strand=Plus/Plus Query 703 TACAAGGGTCTAGTTCCTCTCTGGGGACGTCAGATTCC 740 |||||||| ||||||||||||||||||||||||||||| Sbjct 235034 TACAAGGGACTAGTTCCTCTCTGGGGACGTCAGATTCC 235071 Score = 59.0 bits (64), Expect = 1e-06 Identities = 50/61 (82%), Gaps = 3/61 (5%) Strand=Plus/Plus Query 1083 GCCAACCACTGGCGGGATCACTCCTGCTGCTG---TCACCGCTGCAACTGAGGTTGCAAA 1139 |||||||||||| || | ||||||||||||| |||||||| |||||| ||||||| Sbjct 236259 GCCAACCACTGGTGGTGTAACTCCTGCTGCTGCTACTACCGCTGCTACTGAGCTTGCAAA 236318 Query 1140 G 1140 | Sbjct 236319 G 236319 >Query1 on lcl|Jr6D| Query1 on lcl|Jr6D Length=37991167 Score = 343 bits (380), Expect = 2e-92 Identities = 292/360 (81%), Gaps = 0/360 (0%) Strand=Plus/Plus Query 330 CTTTCAGATTGACCCTGCAAAGTACAAAAGCATCTCATCTGGGTTTGGAGTGTTGCTGAA 389 ||| ||||||||||| || || || || |||||||| ||||| ||||| | ||||| || Sbjct 333191 CTTGCAGATTGACCCAGCTAAATATAAGAGCATCTCGTCTGGATTTGGCATTTTGCTCAA 333250 Query 390 GGATCAGGGCGTCAGAGGCTTCTTCAGGGGTTGGGTACCAACCTTGCTTGGCTACAGTGC 449 ||| ||||| || ||||| ||||||| ||||||||| || || || || || |||||||| Sbjct 333251 GGAGCAGGGAGTTAGAGGTTTCTTCAAGGGTTGGGTGCCCACTTTTCTAGGTTACAGTGC 333310 Query 450 TCAGGGTGCTTGCAAGTTTGGATTCTACGAATTCTTTAAGAAGTACTACTCTGACATTGC 509 ||||| || ||||| | |||| | ||||| || ||||||||||||||||| |||||||| Sbjct 333311 GCAGGGCGCCTGCAAATATGGACTTTACGAGTTTTTTAAGAAGTACTACTCGGACATTGC 333370 Query 510 TGGACCTGAGTATGCATCCAAGTACAAGACCTTGATCTATCTTGCTGGTTCTGCATCTGC 569 || |||||||||||| |||||||||| |||||||||||||||||||||||||| ||||| Sbjct 333371 CGGGCCTGAGTATGCAACCAAGTACAAAACCTTGATCTATCTTGCTGGTTCTGCTTCTGC 333430 Query 570 TGAGGTCATTGCAGATATTGCACTTTGCCCTTTCGAGGCAGTGAAGGTCCGAGTTCAAAC 629 || || ||||| ||| |||| || ||||| | ||||| ||||| || || || ||||| Sbjct 333431 CGAAGTGATTGCTGATGTTGCCCTCTGCCCCATGGAGGCTGTGAAAGTTCGTGTCCAAAC 333490 Query 630 ACAGCCTGGTTTTGCTAGAGGTCTTTCTGATGGGCTTCCTAAGTTTGTTAAATCTGAAGG 689 |||||||| ||||| ||||| | || || || ||||| ||||| | || ||||||| Sbjct 333491 TCAGCCTGGGTTTGCCCGAGGTTTGTCAGACGGACTTCCCAAGTTCATCAAGACTGAAGG 333550 Score = 206 bits (228), Expect = 4e-51 Identities = 179/222 (81%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 737 TTCCATATACAATGATGAAGTTTGCATCTTTTGAGGCCATTGTGGAGAATATTTATAAGT 796 || || |||| |||||||| || ||||| || ||| | |||||||||| | || ||| Sbjct 334539 TTGCAGATACCATGATGAAATTCGCATCCTTCGAGACTATTGTGGAGATGCTGTACAAGC 334598 Query 797 ATGCCATCCCCACTCCGAAGGACCAGTGTAGTAAAAGTCTGCAGCTGGGTGTGAGTTTTG 856 | |||||||| || || || |||||||| || ||| | | || || || ||||| |||| Sbjct 334599 ACGCCATCCCAACCCCAAAAGACCAGTGCAGCAAATCTTTTCAACTTGGGGTGAGCTTTG 334658 Query 857 CTGGTGGATATGTGGCTGGTATATTCTGTGCTATTGTGTCTCATCCTGCTGACAATCTTG 916 |||||||||||||||||||| ||||||||||| | || || || || |||||||| || | Sbjct 334659 CTGGTGGATATGTGGCTGGTGTATTCTGTGCTTTCGTATCACACCCAGCTGACAACCTGG 334718 Query 917 TCTCTTTCCTCAACAATGCCAAAGGGGCAACTGTTGGTGATG 958 | |||||||||||||||||||| || || ||||||||||||| Sbjct 334719 TGTCTTTCCTCAACAATGCCAAGGGTGCTACTGTTGGTGATG 334760 Score = 129 bits (142), Expect = 8e-28 Identities = 104/126 (83%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 958 GCTGTGAAGAAGCTAGGTTTGTGGGGTCTCTTTACCCGTGGGCTTCCTCTCCGTATTGTC 1017 |||||||| || || || ||||||||||| ||||||||||| |||||||| ||||| ||| Sbjct 334857 GCTGTGAAAAATCTCGGGTTGTGGGGTCTTTTTACCCGTGGCCTTCCTCTTCGTATAGTC 334916 Query 1018 ATGATTGGAACTCTTACCGGAGCTCAGTGGGGAATCTATGACGCCTTCAAAGTTTTCGTG 1077 ||||||||||| ||||| ||||| || ||| || ||||| | ||||||||||| || Sbjct 334917 ATGATTGGAACCCTTACGGGAGCCCAATGGATGATTTATGATGGTTTCAAAGTTTTTGTT 334976 Query 1078 GGATTG 1083 ||| || Sbjct 334977 GGACTG 334982 Score = 113 bits (124), Expect = 6e-23 Identities = 97/120 (81%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 184 AGAAGATCGAGATGTACTCCCCACAATTCTACGCCGCCTGTACCGTCGGAGGCATCCTCA 243 ||||||||||||||||||| || ||||||||||| || || | ||| || | ||||| Sbjct 331277 AGAAGATCGAGATGTACTCGCCGGCTTTCTACGCCGCATGCACGGCCGGCGGGACCCTCA 331336 Query 244 GCTGTGGTCTCACTCACATGGCCGTCACTCCCCTCGACCTCGTCAAATGCAATATGCAGG 303 ||||||| ||||| |||| |||| | ||||| || || ||||||| ||||| ||||||| Sbjct 331337 GCTGTGGCCTCACCCACACGGCCCTTACTCCTCTTGATGTCGTCAAGTGCAACATGCAGG 331396 Score = 60.8 bits (66), Expect = 4e-07 Identities = 42/48 (88%), Gaps = 0/48 (0%) Strand=Plus/Plus Query 698 GACTGTACAAGGGTCTAGTTCCTCTCTGGGGACGTCAGATTCCATATA 745 || ||||||| || || |||||||| ||||||||||||||||||| || Sbjct 333653 GATTGTACAAAGGACTTGTTCCTCTTTGGGGACGTCAGATTCCATGTA 333700 Score = 41.0 bits (44), Expect = 0.33 Identities = 27/30 (90%), Gaps = 0/30 (0%) Strand=Plus/Plus Query 31 TCTCTGATCCCCAGTTTCCTCTACTCTTCT 60 ||||| ||||| || ||||||||||||||| Sbjct 331120 TCTCTTATCCCAAGCTTCCTCTACTCTTCT 331149 >Query1 on lcl|Jr3S| Query1 on lcl|Jr3S Length=28458890 Score = 71.6 bits (78), Expect = 2e-10 Identities = 53/61 (87%), Gaps = 1/61 (2%) Strand=Plus/Minus Query 1201 GATAACCTAAATGCTCCAGACAAAGGCCGAGGAGGAGATGGAGGTTTTGGTGGCGGAGTC 1260 ||||||| | ||||||| ||||||||| |||| ||||||||||| ||||||||| |||| Sbjct 12069371 GATAACCCAGATGCTCCTGACAAAGGCAGAGGCGGAGATGGAGG-TTTGGTGGCAAAGTC 12069313 Query 1261 C 1261 | Sbjct 12069312 C 12069312 Score = 37.4 bits (40), Expect = 4.0 Identities = 42/54 (78%), Gaps = 2/54 (4%) Strand=Plus/Plus Query 34 CTGATCCCCAGTTTCCTCTACTCTTCTTCTCTCTCCCACAAAACCCTACCTCTC 87 || |||||||| || ||| | ||| ||||||||||| || || || || |||| Sbjct 4665694 CTTATCCCCAGATTT-TCTCC-CTTTTTCTCTCTCCCCCACAATCCCACTTCTC 4665745 Score = 37.4 bits (40), Expect = 4.0 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Minus Query 934 GCCAAAGGGGCAACTGTTGGTGATG 958 |||||||| ||| |||||||||||| Sbjct 24255342 GCCAAAGGAGCAGCTGTTGGTGATG 24255318 >Query1 on lcl|Jr1D| Query1 on lcl|Jr1D Length=51893103 Score = 41.0 bits (44), Expect = 0.33 Identities = 42/55 (76%), Gaps = 4/55 (7%) Strand=Plus/Minus Query 1210 AATGCTCCAGACAAAGGCCGAGGAGG----AGATGGAGGTTTTGGTGGCGGAGTC 1260 ||||| |||| ||||| ||||||| |||||||||||| | |||||||| Sbjct 37030377 AATGCGGCAGAGAAAGGAGGAGGAGGCGAGAGATGGAGGTTTCTGGAGCGGAGTC 37030323 Score = 37.4 bits (40), Expect = 4.0 Identities = 31/37 (84%), Gaps = 1/37 (3%) Strand=Plus/Plus Query 886 GCTATTGTGTCTCATCCTGCTGACAATCTTGTCTCTT 922 |||| | | ||| ||| || ||||||||||||||||| Sbjct 6650777 GCTACTCTATCT-ATCTTGGTGACAATCTTGTCTCTT 6650812 >Query1 on lcl|Jr8D| Query1 on lcl|Jr8D Length=35197335 Score = 39.2 bits (42), Expect = 1.1 Identities = 24/26 (92%), Gaps = 0/26 (0%) Strand=Plus/Plus Query 45 TTTCCTCTACTCTTCTTCTCTCTCCC 70 |||||||| || |||||||||||||| Sbjct 9199565 TTTCCTCTTCTTTTCTTCTCTCTCCC 9199590 >Query1 on lcl|Jr7S| Query1 on lcl|Jr7S Length=22705590 Score = 39.2 bits (42), Expect = 1.1 Identities = 25/26 (96%), Gaps = 1/26 (4%) Strand=Plus/Plus Query 43 AGTTTCCTCTACTC-TTCTTCTCTCT 67 |||||||||||||| ||||||||||| Sbjct 10476389 AGTTTCCTCTACTCTTTCTTCTCTCT 10476414 Score = 37.4 bits (40), Expect = 4.0 Identities = 26/30 (87%), Gaps = 0/30 (0%) Strand=Plus/Plus Query 1223 AAGGCCGAGGAGGAGATGGAGGTTTTGGTG 1252 |||| |||||||||||||||| |||||| Sbjct 860843 AAGGTGGAGGAGGAGATGGAGGGCTTGGTG 860872 >Query1 on lcl|Jr7D| Query1 on lcl|Jr7D Length=29017359 Score = 39.2 bits (42), Expect = 1.1 Identities = 27/31 (87%), Gaps = 0/31 (0%) Strand=Plus/Minus Query 1229 GAGGAGGAGATGGAGGTTTTGGTGGCGGAGT 1259 |||||||||||||||| |||||| ||||| Sbjct 25741292 GAGGAGGAGATGGAGGAGGTGGTGGTGGAGT 25741262 Score = 37.4 bits (40), Expect = 4.0 Identities = 25/28 (89%), Gaps = 0/28 (0%) Strand=Plus/Minus Query 1231 GGAGGAGATGGAGGTTTTGGTGGCGGAG 1258 |||||||||||||| ||||||||||| Sbjct 25753051 GGAGGAGATGGAGGAGGTGGTGGCGGAG 25753024 Score = 37.4 bits (40), Expect = 4.0 Identities = 26/30 (87%), Gaps = 0/30 (0%) Strand=Plus/Minus Query 1229 GAGGAGGAGATGGAGGTTTTGGTGGCGGAG 1258 || |||||||||||||| |||||| |||| Sbjct 25753595 GAAGAGGAGATGGAGGTGGTGGTGGTGGAG 25753566 Score = 37.4 bits (40), Expect = 4.0 Identities = 26/30 (87%), Gaps = 0/30 (0%) Strand=Plus/Minus Query 1229 GAGGAGGAGATGGAGGTTTTGGTGGCGGAG 1258 |||||||||||||||| |||||| |||| Sbjct 25753730 GAGGAGGAGATGGAGGAGGTGGTGGTGGAG 25753701 >Query1 on lcl|Jr8S| Query1 on lcl|Jr8S Length=19617005 Score = 37.4 bits (40), Expect = 4.0 Identities = 28/33 (85%), Gaps = 0/33 (0%) Strand=Plus/Plus Query 903 TGCTGACAATCTTGTCTCTTTCCTCAACAATGC 935 |||||||||||||| |||| | ||||||||| Sbjct 4350703 TGCTGACAATCTTGCATCTTCCTCCAACAATGC 4350735 >Query1 on lcl|Jr5D| Query1 on lcl|Jr5D Length=33932481 Score = 37.4 bits (40), Expect = 4.0 Identities = 29/32 (91%), Gaps = 2/32 (6%) Strand=Plus/Minus Query 1147 GGGTTTTTCGTTGCCTCCCAAGATTTTGGAGT 1178 |||||||| ||| ||||| ||||||||||||| Sbjct 24954342 GGGTTTTT-GTTTCCTCC-AAGATTTTGGAGT 24954313 >Query1 on lcl|Jr3D| Query1 on lcl|Jr3D Length=38540051 Score = 37.4 bits (40), Expect = 4.0 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Plus Query 934 GCCAAAGGGGCAACTGTTGGTGATG 958 |||||||| |||| ||||||||||| Sbjct 5922041 GCCAAAGGAGCAAGTGTTGGTGATG 5922065 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 703625280456 Database: JrSerr_genome.fa Posted date: Apr 26, 2019 2:59 PM Number of letters in database: 534,671,929 Number of sequences in database: 73 Matrix: blastn matrix 2 -3 Gap Penalties: Existence: 5, Extension: 2