BLAST Results
BLASTN 2.2.28+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jm3101_genome.fa 154 sequences; 527,895,757 total letters Query= Length=221 Score E Sequences producing significant alignments: (Bits) Value lcl|Jm4D 394 2e-108 lcl|Jm3D 214 4e-54 lcl|Jm3S 201 2e-50 lcl|Jm8S 190 4e-47 lcl|Jm7S 141 2e-32 lcl|Jm2D 107 4e-22 lcl|Jm4S 93.3 9e-18 lcl|Jm5D 51.8 3e-05 lcl|Jm6D 44.6 0.004 lcl|Jm2S 35.6 2.0 lcl|Jm1S 35.6 2.0 lcl|Jm1D 35.6 2.0 >Query1 on lcl|Jm4D| Query1 on lcl|Jm4D Length=35629462 Score = 394 bits (436), Expect = 2e-108 Identities = 220/221 (99%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 1 GGGAAATACACTCCACAATACAAATGGCTTGTAAAGGAACTGCCCAGAGTAAACAGGACT 60 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 27873767 GGGAAATACACTCCACAATACAAATGGCTTGTAAAGGAACTGCCCAGAGTGAACAGGACT 27873826 Query 61 GAGACGCCGTGGCTTATCGTTTTTATGCATTGCCCACTATATAGTAGTTATGTACATCAT 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 27873827 GAGACGCCGTGGCTTATCGTTTTTATGCATTGCCCACTATATAGTAGTTATGTACATCAT 27873886 Query 121 TATATGGAAGGGGAAACCATGAGAGTGATTTATGAGCAATGGTTTGTGGAGTATAAAGTT 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 27873887 TATATGGAAGGGGAAACCATGAGAGTGATTTATGAGCAATGGTTTGTGGAGTATAAAGTT 27873946 Query 181 GATGTTGTCTTTGCTGGTCATGTTCATGCCTATGAACGATC 221 ||||||||||||||||||||||||||||||||||||||||| Sbjct 27873947 GATGTTGTCTTTGCTGGTCATGTTCATGCCTATGAACGATC 27873987 Score = 123 bits (136), Expect = 5e-27 Identities = 160/221 (72%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 1 GGGAAATACACTCCACAATACAAATGGCTTGTAAAGGAACTGCCCAGAGTAAACAGGACT 60 || ||||||||||| ||||||| ||||| | |||| || ||| ||| || | || Sbjct 7641596 GGTAAATACACTCCTCAATACACTTGGCTCAAACAGGAGCTCACCAAAGTTAATCGAGCT 7641655 Query 61 GAGACGCCGTGGCTTATCGTTTTTATGCATTGCCCACTATATAGTAGTTATGTACATCAT 120 || || || |||||||| ||| || | || | ||| |||| || | | ||| Sbjct 7641656 GAAACTCCATGGCTTATAGTTCTTCTTCACTCACCATGGTATAACAGCAACAACTACCAT 7641715 Query 121 TATATGGAAGGGGAAACCATGAGAGTGATTTATGAGCAATGGTTTGTGGAGTATAAAGTT 180 | ||||||||| |||| |||||||||| || ||| |||||||| || |||||| Sbjct 7641716 TTTATGGAAGGAGAAAGCATGAGAGTGGCTTTTGAATCCTGGTTTGTTGAAAGCAAAGTT 7641775 Query 181 GATGTTGTCTTTGCTGGTCATGTTCATGCCTATGAACGATC 221 || |||| ||||| |||||||||||||||||||| || || Sbjct 7641776 GACATTGTGTTTGCCGGTCATGTTCATGCCTATGAGCGTTC 7641816 Score = 33.7 bits (36), Expect = 7.0 Identities = 26/31 (84%), Gaps = 0/31 (0%) Strand=Plus/Plus Query 124 ATGGAAGGGGAAACCATGAGAGTGATTTATG 154 ||| || || ||||||||||| ||||| ||| Sbjct 13020773 ATGTAAAGGTAAACCATGAGAATGATTGATG 13020803 >Query1 on lcl|Jm3D| Query1 on lcl|Jm3D Length=39900371 Score = 214 bits (236), Expect = 4e-54 Identities = 180/221 (81%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 1 GGGAAATACACTCCACAATACAAATGGCTTGTAAAGGAACTGCCCAGAGTAAACAGGACT 60 || |||||||| || |||||| ||||||||| | ||||| |||| | ||| ||||||||| Sbjct 5459449 GGTAAATACACCCCTCAATACCAATGGCTTGAACAGGAATTGCCAAAAGTTAACAGGACT 5459390 Query 61 GAGACGCCGTGGCTTATCGTTTTTATGCATTGCCCACTATATAGTAGTTATGTACATCAT 120 ||||| || ||| | || ||| | ||||||| ||| |||| ||| || ||||| Sbjct 5459389 GAGACACCTTGGTTGATTGTTCTAATGCATTCCCCCTGGTATAATAGCTACAACTATCAT 5459330 Query 121 TATATGGAAGGGGAAACCATGAGAGTGATTTATGAGCAATGGTTTGTGGAGTATAAAGTT 180 |||||||| ||||||||||||||||| || |||||| |||||||||| |||| |||||| Sbjct 5459329 TATATGGAGGGGGAAACCATGAGAGTAATGTATGAGGGATGGTTTGTGAAGTACAAAGTT 5459270 Query 181 GATGTTGTCTTTGCTGGTCATGTTCATGCCTATGAACGATC 221 ||||| || ||||| ||||||||||| || ||||||||||| Sbjct 5459269 GATGTGGTATTTGCAGGTCATGTTCACGCTTATGAACGATC 5459229 Score = 33.7 bits (36), Expect = 7.0 Identities = 20/21 (95%), Gaps = 0/21 (0%) Strand=Plus/Plus Query 170 AGTATAAAGTTGATGTTGTCT 190 || |||||||||||||||||| Sbjct 19598193 AGCATAAAGTTGATGTTGTCT 19598213 >Query1 on lcl|Jm3S| Query1 on lcl|Jm3S Length=27832763 Score = 201 bits (222), Expect = 2e-50 Identities = 177/221 (80%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 1 GGGAAATACACTCCACAATACAAATGGCTTGTAAAGGAACTGCCCAGAGTAAACAGGACT 60 || ||||| || || ||||||| |||||||| | ||||||| || | ||| || ||||| Sbjct 24071713 GGTAAATATACGCCTCAATACACATGGCTTGAAGAGGAACTACCGAAAGTTAATAGGACC 24071772 Query 61 GAGACGCCGTGGCTTATCGTTTTTATGCATTGCCCACTATATAGTAGTTATGTACATCAT 120 ||||| || ||||| || ||| | | ||||| ||| |||| ||| ||| ||||| Sbjct 24071773 GAGACACCTTGGCTGATTGTTCTCACGCATTCCCCTTGGTATAATAGCTATAACTATCAT 24071832 Query 121 TATATGGAAGGGGAAACCATGAGAGTGATTTATGAGCAATGGTTTGTGGAGTATAAAGTT 180 |||||||| ||||||||||||||||| || | |||| ||||||||| |||| |||||| Sbjct 24071833 TATATGGAGGGGGAAACCATGAGAGTAATGTTTGAGGCCTGGTTTGTGAAGTACAAAGTT 24071892 Query 181 GATGTTGTCTTTGCTGGTCATGTTCATGCCTATGAACGATC 221 ||||| || |||||||||||||||||||| ||||| ||||| Sbjct 24071893 GATGTGGTATTTGCTGGTCATGTTCATGCTTATGAGCGATC 24071933 Score = 33.7 bits (36), Expect = 7.0 Identities = 21/23 (91%), Gaps = 0/23 (0%) Strand=Plus/Minus Query 186 TGTCTTTGCTGGTCATGTTCATG 208 ||| |||||||||||||| |||| Sbjct 1104627 TGTTTTTGCTGGTCATGTACATG 1104605 Score = 33.7 bits (36), Expect = 7.0 Identities = 20/21 (95%), Gaps = 0/21 (0%) Strand=Plus/Minus Query 104 GTAGTTATGTACATCATTATA 124 ||||||||||||||||| ||| Sbjct 4711631 GTAGTTATGTACATCATGATA 4711611 >Query1 on lcl|Jm8S| Query1 on lcl|Jm8S Length=19962766 Score = 190 bits (210), Expect = 4e-47 Identities = 168/210 (80%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 4 AAATACACTCCACAATACAAATGGCTTGTAAAGGAACTGCCCAGAGTAAACAGGACTGAG 63 ||||| || || |||||||||||||| | ||||||| || | ||| || ||||| ||| Sbjct 356859 AAATATACACCTCAATACAAATGGCTCAAAGAGGAACTACCGAAAGTTAATAGGACCGAG 356918 Query 64 ACGCCGTGGCTTATCGTTTTTATGCATTGCCCACTATATAGTAGTTATGTACATCATTAT 123 || || ||| | || ||| ||||||||| ||| |||| ||| ||| |||||||| Sbjct 356919 ACACCTTGGTTGATTGTTCTTATGCATTCCCCTTGGTATAATAGCTATAACTATCATTAT 356978 Query 124 ATGGAAGGGGAAACCATGAGAGTGATTTATGAGCAATGGTTTGTGGAGTATAAAGTTGAT 183 ||||| |||||| |||||||||| || | |||| ||||||||| |||| ||||||||| Sbjct 356979 ATGGAGGGGGAAGCCATGAGAGTAATGTTTGAGGCTTGGTTTGTGAAGTACAAAGTTGAT 357038 Query 184 GTTGTCTTTGCTGGTCATGTTCATGCCTAT 213 ||||| |||||||||||||||||||| ||| Sbjct 357039 GTTGTATTTGCTGGTCATGTTCATGCTTAT 357068 Score = 35.6 bits (38), Expect = 2.0 Identities = 30/36 (83%), Gaps = 1/36 (3%) Strand=Plus/Plus Query 76 ATCGTTTTTATGCATTGCCCACTATATAGTAGTTAT 111 ||||||||||| | |||||| |||| | ||||||| Sbjct 9518628 ATCGTTTTTATCCCTTGCCC-CTATTGAATAGTTAT 9518662 >Query1 on lcl|Jm7S| Query1 on lcl|Jm7S Length=21889424 Score = 141 bits (156), Expect = 2e-32 Identities = 164/221 (74%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 1 GGGAAATACACTCCACAATACAAATGGCTTGTAAAGGAACTGCCCAGAGTAAACAGGACT 60 || ||||||||||| ||||||| ||||| |||||| || ||| ||| || | || Sbjct 18698313 GGTAAATACACTCCTCAATACACTTGGCTCCAAAAGGAGCTCACCAAAGTTAATCGAGCT 18698372 Query 61 GAGACGCCGTGGCTTATCGTTTTTATGCATTGCCCACTATATAGTAGTTATGTACATCAT 120 || || || |||||||| ||| || | || | ||| |||| || | | ||| Sbjct 18698373 GAAACTCCTTGGCTTATAGTTCTTCTTCACTCACCATGGTATAACAGCAACAACTACCAT 18698432 Query 121 TATATGGAAGGGGAAACCATGAGAGTGATTTATGAGCAATGGTTTGTGGAGTATAAAGTT 180 ||||||||||| |||| ||||||||||| || ||| |||||||| || |||||| Sbjct 18698433 TATATGGAAGGAGAAAGCATGAGAGTGACTTTTGAATCCTGGTTTGTTGAAAGCAAAGTT 18698492 Query 181 GATGTTGTCTTTGCTGGTCATGTTCATGCCTATGAACGATC 221 || |||| |||||||||||||||||||||||||| || || Sbjct 18698493 GACATTGTTTTTGCTGGTCATGTTCATGCCTATGAGCGTTC 18698533 >Query1 on lcl|Jm2D| Query1 on lcl|Jm2D Length=43614719 Score = 107 bits (118), Expect = 4e-22 Identities = 155/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 3 GAAATACACTCCACAATACAAATGGCTTGTAAAGGAACTGCCCAGAGTAAACAGGACTGA 62 ||| ||||| || |||| | |||||| | | || | | || || ||||| | Sbjct 39777556 GAAGTACACCCCTCAATGGATGTGGCTTAAAGAAGAGTTATCAAGGGTTGACAGGGAGAA 39777497 Query 63 GACGCCGTGGCTTATCGTTTTTATGCATTGCCCACTATATAGTAGTTATGTACATCATTA 122 ||| || ||||| || ||| |||||||| ||| | || | ||| ||| | ||| || Sbjct 39777496 GACTCCTTGGCTCATTGTTCTTATGCATGTGCCAATCTACAATAGCAATGAAGCTCACTA 39777437 Query 123 TATGGAAGGGGAAACCATGAGAGTGATTTATGAGCAATGGTTTGTGGAGTATAAAGTTGA 182 ||||| ||||||| ||| ||| || | |||| ||||| | | || |||||||| Sbjct 39777436 CATGGAGGGGGAAAGTATGCGAGCTATATTTGAGAGTTGGTTCATCCATTACAAAGTTGA 39777377 Query 183 TGTTGTCTTTGCTGGTCATGTTCATGCCTATGAACGATC 221 ||| ||||||||||| ||||| ||||| |||||| |||| Sbjct 39777376 TGTAGTCTTTGCTGGCCATGTCCATGCTTATGAAAGATC 39777338 Score = 41.0 bits (44), Expect = 0.047 Identities = 24/25 (96%), Gaps = 0/25 (0%) Strand=Plus/Plus Query 154 GAGCAATGGTTTGTGGAGTATAAAG 178 ||||||||| ||||||||||||||| Sbjct 34154730 GAGCAATGGGTTGTGGAGTATAAAG 34154754 Score = 35.6 bits (38), Expect = 2.0 Identities = 22/24 (92%), Gaps = 0/24 (0%) Strand=Plus/Minus Query 98 TATATAGTAGTTATGTACATCATT 121 || |||||||| |||||||||||| Sbjct 33354640 TAAATAGTAGTGATGTACATCATT 33354617 Score = 33.7 bits (36), Expect = 7.0 Identities = 27/33 (82%), Gaps = 0/33 (0%) Strand=Plus/Minus Query 117 TCATTATATGGAAGGGGAAACCATGAGAGTGAT 149 ||| || | ||||||||||| ||||| | |||| Sbjct 6080672 TCACTAAAGGGAAGGGGAAAACATGAAAATGAT 6080640 Score = 33.7 bits (36), Expect = 7.0 Identities = 28/33 (85%), Gaps = 1/33 (3%) Strand=Plus/Minus Query 98 TATATAGTAGTTATGTACATCATTATATGGAAG 130 |||||| || |||| | |||||||||||| ||| Sbjct 24454888 TATATA-TATTTATTTTCATCATTATATGAAAG 24454857 Score = 33.7 bits (36), Expect = 7.0 Identities = 28/33 (85%), Gaps = 1/33 (3%) Strand=Plus/Minus Query 98 TATATAGTAGTTATGTACATCATTATATGGAAG 130 |||||| || |||| | |||||||||||| ||| Sbjct 24597183 TATATA-TATTTATTTTCATCATTATATGAAAG 24597152 >Query1 on lcl|Jm4S| Query1 on lcl|Jm4S Length=27577207 Score = 93.3 bits (102), Expect = 9e-18 Identities = 154/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 3 GAAATACACTCCACAATACAAATGGCTTGTAAAGGAACTGCCCAGAGTAAACAGGACTGA 62 |||||| || | |||| | ||||| | | ||||| ||||| | |||| | Sbjct 1014109 GAAATATACACTTCAATGGAGGTGGCTGCAAGAAGAACTAAAAAGAGTGGATAGGAGGAA 1014168 Query 63 GACGCCGTGGCTTATCGTTTTTATGCAT-TGCCCACTATATAGTAGTTATGTACATCATT 121 ||| || |||||||| || | | ||| | |||| | || |||||| | | || | Sbjct 1014169 GACACCTTGGCTTATTATTCTCCTTCATGTACCCA-TCTACAGTAGTAACTCAGCCCACT 1014227 Query 122 ATATGGAAGGGGAAACCATGAGAGTGATTTATGAGCAATGGTTTGTGGAGTATAAAGTTG 181 |||||||||| |||| ||| ||| | | |||| ||||||||| |||| ||||| Sbjct 1014228 ATATGGAAGGTGAAAGTATGCGAGCTGTCTTTGAGAGATGGTTTGTCTGTTATAGAGTTG 1014287 Query 182 ATGTTGTCTTTGCTGGTCATGTTCATGCCTATGAACGATC 221 || | || |||||||| || ||||||||||||||| |||| Sbjct 1014288 ATTTCGTATTTGCTGGGCACGTTCATGCCTATGAAAGATC 1014327 >Query1 on lcl|Jm5D| Query1 on lcl|Jm5D Length=35798223 Score = 51.8 bits (56), Expect = 3e-05 Identities = 36/41 (88%), Gaps = 0/41 (0%) Strand=Plus/Minus Query 178 GTTGATGTTGTCTTTGCTGGTCATGTTCATGCCTATGAACG 218 || ||||| || |||||||| ||||||||||| |||||||| Sbjct 1175171 GTCGATGTGGTTTTTGCTGGACATGTTCATGCATATGAACG 1175131 Score = 48.2 bits (52), Expect = 3e-04 Identities = 35/41 (85%), Gaps = 0/41 (0%) Strand=Plus/Plus Query 178 GTTGATGTTGTCTTTGCTGGTCATGTTCATGCCTATGAACG 218 || |||||||| ||||| || ||||| ||||||||||| || Sbjct 1187023 GTGGATGTTGTTTTTGCCGGACATGTACATGCCTATGAGCG 1187063 Score = 46.4 bits (50), Expect = 0.001 Identities = 36/43 (84%), Gaps = 0/43 (0%) Strand=Plus/Minus Query 178 GTTGATGTTGTCTTTGCTGGTCATGTTCATGCCTATGAACGAT 220 || || || || ||||| || ||||||||||| |||||||||| Sbjct 1164142 GTCGACGTGGTTTTTGCAGGCCATGTTCATGCATATGAACGAT 1164100 >Query1 on lcl|Jm6D| Query1 on lcl|Jm6D Length=38364907 Score = 44.6 bits (48), Expect = 0.004 Identities = 36/44 (82%), Gaps = 0/44 (0%) Strand=Plus/Minus Query 175 AAAGTTGATGTTGTCTTTGCTGGTCATGTTCATGCCTATGAACG 218 || || ||| | || ||||||||||||||||||| || ||||| Sbjct 36510531 AATGTGGATATAGTACTTGCTGGTCATGTTCATGCTTACGAACG 36510488 Score = 37.4 bits (40), Expect = 0.58 Identities = 20/20 (100%), Gaps = 0/20 (0%) Strand=Plus/Minus Query 179 TTGATGTTGTCTTTGCTGGT 198 |||||||||||||||||||| Sbjct 29918138 TTGATGTTGTCTTTGCTGGT 29918119 Score = 33.7 bits (36), Expect = 7.0 Identities = 26/31 (84%), Gaps = 0/31 (0%) Strand=Plus/Plus Query 96 ACTATATAGTAGTTATGTACATCATTATATG 126 ||||||||||| |||| || ||||||||| Sbjct 20005804 ACTATATAGTATTTATATAGTGCATTATATG 20005834 >Query1 on lcl|Jm2S| Query1 on lcl|Jm2S Length=34707362 Score = 35.6 bits (38), Expect = 2.0 Identities = 23/24 (96%), Gaps = 1/24 (4%) Strand=Plus/Minus Query 79 GTTTTTATGCATTGCCCACTATAT 102 ||||||||||||||||| |||||| Sbjct 24233480 GTTTTTATGCATTGCCC-CTATAT 24233458 Score = 33.7 bits (36), Expect = 7.0 Identities = 21/23 (91%), Gaps = 0/23 (0%) Strand=Plus/Plus Query 128 AAGGGGAAACCATGAGAGTGATT 150 ||||||||||| |||||||||| Sbjct 20735277 AAGGGGAAACCTCGAGAGTGATT 20735299 >Query1 on lcl|Jm1S| Query1 on lcl|Jm1S Length=30169828 Score = 35.6 bits (38), Expect = 2.0 Identities = 25/29 (86%), Gaps = 0/29 (0%) Strand=Plus/Minus Query 100 TATAGTAGTTATGTACATCATTATATGGA 128 ||||||||||| ||||||||| | |||| Sbjct 5226531 TATAGTAGTTACGTACATCATCAGTTGGA 5226503 >Query1 on lcl|Jm1D| Query1 on lcl|Jm1D Length=49856174 Score = 35.6 bits (38), Expect = 2.0 Identities = 22/24 (92%), Gaps = 0/24 (0%) Strand=Plus/Minus Query 24 ATGGCTTGTAAAGGAACTGCCCAG 47 |||| |||||||||||||||| || Sbjct 41829972 ATGGGTTGTAAAGGAACTGCCTAG 41829949 Score = 33.7 bits (36), Expect = 7.0 Identities = 27/33 (82%), Gaps = 0/33 (0%) Strand=Plus/Plus Query 96 ACTATATAGTAGTTATGTACATCATTATATGGA 128 ||||||||||| |||| || |||||||| || Sbjct 13487342 ACTATATAGTATTTATATAGTGCATTATATAGA 13487374 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 101355127872 Database: Jm3101_genome.fa Posted date: Apr 26, 2019 3:00 PM Number of letters in database: 527,895,757 Number of sequences in database: 154 Matrix: blastn matrix 2 -3 Gap Penalties: Existence: 5, Extension: 2