BLAST Results
BLASTN 2.2.28+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jm3101_genome.fa 154 sequences; 527,895,757 total letters Query= Length=356 Score E Sequences producing significant alignments: (Bits) Value lcl|Jm2D 628 9e-179 lcl|Jm2S 547 2e-154 lcl|Jm6D 336 8e-91 lcl|Jm5D 35.6 3.4 lcl|Jm4D 35.6 3.4 >Query1 on lcl|Jm2D| Query1 on lcl|Jm2D Length=43614719 Score = 628 bits (696), Expect = 9e-179 Identities = 353/356 (99%), Gaps = 0/356 (0%) Strand=Plus/Plus Query 1 CAGATTGACCCTGCAAAGTACAAAAGCATCTCATCTGGGTTTGGAGTGTTGCTGAAGGAT 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 372952 CAGATTGACCCTGCAAAGTACAAAAGCATCTCATCTGGGTTTGGAGTGTTGCTGAAGGAT 373011 Query 61 CAGGGCGTCAGAGGCTTCTTCAGGGGTTGGGTACCAACCTTGCTTGGCTACAGTGCTCAG 120 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 373012 CAGGGCATCAGAGGCTTCTTCAGGGGTTGGGTACCAACCTTGCTTGGCTACAGTGCTCAG 373071 Query 121 GGTGCTTGCAAGTTTGGATTCTACGAATTCTTTAAGAAGTACTACTCTGACATTGCTGGA 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 373072 GGTGCTTGCAAGTTTGGATTCTACGAATTCTTTAAGAAGTACTACTCTGACATTGCTGGA 373131 Query 181 CCTGAGTATGCATCCAAGTACAAGACCTTGATCTATCTTGCTGGTTCTGCATCTGCTGAG 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 373132 CCTGAGTATGCATCCAAGTACAAGACCTTGATCTATCTTGCTGGTTCTGCATCTGCCGAG 373191 Query 241 GTCATTGCAGATATTGCACTTTGCCCTTTCGAGGCAGTGAAGGTCCGAGTTCAAACACAG 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 373192 GTCATTGCAGATATTGCACTTTGCCCTTTCGAGGCAGTGAAGGTCCGAGTTCAAACACAG 373251 Query 301 CCTGGTTTTGCTAGAGGTCTTTCTGATGGGCTTCCTAAGTTTGTTAAATCTGAAGG 356 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 373252 CCTGGTTTTGCTAGAGGTCTTTCAGATGGGCTTCCTAAGTTTGTTAAATCTGAAGG 373307 >Query1 on lcl|Jm2S| Query1 on lcl|Jm2S Length=34707362 Score = 547 bits (606), Expect = 2e-154 Identities = 335/356 (94%), Gaps = 0/356 (0%) Strand=Plus/Plus Query 1 CAGATTGACCCTGCAAAGTACAAAAGCATCTCATCTGGGTTTGGAGTGTTGCTGAAGGAT 60 ||||||||||||||||||||||||| |||||||||||| ||||||||| |||||||||| Sbjct 199918 CAGATTGACCCTGCAAAGTACAAAACCATCTCATCTGGTTTTGGAGTGCTGCTGAAGGAG 199977 Query 61 CAGGGCGTCAGAGGCTTCTTCAGGGGTTGGGTACCAACCTTGCTTGGCTACAGTGCTCAG 120 |||||| ||||||||||||||||||||||||| |||||||||||||| |||||||||||| Sbjct 199978 CAGGGCATCAGAGGCTTCTTCAGGGGTTGGGTGCCAACCTTGCTTGGTTACAGTGCTCAG 200037 Query 121 GGTGCTTGCAAGTTTGGATTCTACGAATTCTTTAAGAAGTACTACTCTGACATTGCTGGA 180 ||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||||||| Sbjct 200038 GGTGCCTGCAAGTTTGGATTCTATGAATTCTTTAAGAAATACTACTCTGACATTGCTGGA 200097 Query 181 CCTGAGTATGCATCCAAGTACAAGACCTTGATCTATCTTGCTGGTTCTGCATCTGCTGAG 240 |||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 200098 CCTGAGTATGCAACCAAGTACAAAACCTTGATCTATCTTGCTGGTTCTGCATCTGCTGAG 200157 Query 241 GTCATTGCAGATATTGCACTTTGCCCTTTCGAGGCAGTGAAGGTCCGAGTTCAAACACAG 300 |||||||| || ||||| ||||||||||| |||||||||||||||||||||||||| ||| Sbjct 200158 GTCATTGCGGACATTGCTCTTTGCCCTTTTGAGGCAGTGAAGGTCCGAGTTCAAACTCAG 200217 Query 301 CCTGGTTTTGCTAGAGGTCTTTCTGATGGGCTTCCTAAGTTTGTTAAATCTGAAGG 356 ||||||||||||||||||||||| ||||||||||| ||||||||||| || ||||| Sbjct 200218 CCTGGTTTTGCTAGAGGTCTTTCAGATGGGCTTCCGAAGTTTGTTAAGTCGGAAGG 200273 Score = 35.6 bits (38), Expect = 3.4 Identities = 22/24 (92%), Gaps = 0/24 (0%) Strand=Plus/Minus Query 292 CAAACACAGCCTGGTTTTGCTAGA 315 |||||||||||| || |||||||| Sbjct 9152645 CAAACACAGCCTAGTGTTGCTAGA 9152622 Score = 35.6 bits (38), Expect = 3.4 Identities = 19/19 (100%), Gaps = 0/19 (0%) Strand=Plus/Plus Query 197 AGTACAAGACCTTGATCTA 215 ||||||||||||||||||| Sbjct 25165351 AGTACAAGACCTTGATCTA 25165369 >Query1 on lcl|Jm6D| Query1 on lcl|Jm6D Length=38364907 Score = 336 bits (372), Expect = 8e-91 Identities = 288/356 (81%), Gaps = 0/356 (0%) Strand=Plus/Plus Query 1 CAGATTGACCCTGCAAAGTACAAAAGCATCTCATCTGGGTTTGGAGTGTTGCTGAAGGAT 60 ||||||||||| || || || || |||||||| ||||| ||||| | ||||||||||| Sbjct 332609 CAGATTGACCCAGCTAAATATAAGAGCATCTCGTCTGGATTTGGCATTTTGCTGAAGGAG 332668 Query 61 CAGGGCGTCAGAGGCTTCTTCAGGGGTTGGGTACCAACCTTGCTTGGCTACAGTGCTCAG 120 ||||| || ||||| ||||||| ||||||||| || || || ||||| |||||||| ||| Sbjct 332669 CAGGGAGTTAGAGGTTTCTTCAAGGGTTGGGTGCCCACTTTTCTTGGTTACAGTGCGCAG 332728 Query 121 GGTGCTTGCAAGTTTGGATTCTACGAATTCTTTAAGAAGTACTACTCTGACATTGCTGGA 180 || || ||||| | |||| | ||||| || ||||||||||||||||| |||||||| || Sbjct 332729 GGCGCCTGCAAATATGGACTTTACGAGTTTTTTAAGAAGTACTACTCGGACATTGCCGGG 332788 Query 181 CCTGAGTATGCATCCAAGTACAAGACCTTGATCTATCTTGCTGGTTCTGCATCTGCTGAG 240 |||||||||||| |||||||||| ||||||||||||||||||||||| || ||||| || Sbjct 332789 CCTGAGTATGCAACCAAGTACAAAACCTTGATCTATCTTGCTGGTTCAGCTTCTGCCGAA 332848 Query 241 GTCATTGCAGATATTGCACTTTGCCCTTTCGAGGCAGTGAAGGTCCGAGTTCAAACACAG 300 | ||||| ||| |||| || ||||| | ||||| |||| || || || ||||| ||| Sbjct 332849 CTGATTGCTGATGTTGCCCTCTGCCCCATGGAGGCTTTGAAAGTTCGTGTCCAAACTCAG 332908 Query 301 CCTGGTTTTGCTAGAGGTCTTTCTGATGGGCTTCCTAAGTTTGTTAAATCTGAAGG 356 ||||| ||||| ||||| | || || || ||||| ||||| | || ||||||| Sbjct 332909 CCTGGGTTTGCCCGAGGTTTGTCAGACGGACTTCCCAAGTTCATCAAGACTGAAGG 332964 >Query1 on lcl|Jm5D| Query1 on lcl|Jm5D Length=35798223 Score = 35.6 bits (38), Expect = 3.4 Identities = 22/24 (92%), Gaps = 0/24 (0%) Strand=Plus/Minus Query 292 CAAACACAGCCTGGTTTTGCTAGA 315 |||||||||||| || |||||||| Sbjct 6573850 CAAACACAGCCTAGTGTTGCTAGA 6573827 Score = 35.6 bits (38), Expect = 3.4 Identities = 21/22 (95%), Gaps = 0/22 (0%) Strand=Plus/Minus Query 126 TTGCAAGTTTGGATTCTACGAA 147 ||||||||||||||||||| || Sbjct 31379945 TTGCAAGTTTGGATTCTACAAA 31379924 Score = 35.6 bits (38), Expect = 3.4 Identities = 21/22 (95%), Gaps = 0/22 (0%) Strand=Plus/Minus Query 126 TTGCAAGTTTGGATTCTACGAA 147 ||||||||||||||||||| || Sbjct 31379991 TTGCAAGTTTGGATTCTACAAA 31379970 >Query1 on lcl|Jm4D| Query1 on lcl|Jm4D Length=35629462 Score = 35.6 bits (38), Expect = 3.4 Identities = 31/39 (79%), Gaps = 0/39 (0%) Strand=Plus/Minus Query 221 CTGGTTCTGCATCTGCTGAGGTCATTGCAGATATTGCAC 259 ||| | |||||||||||||| | ||||| ||||||| Sbjct 25092783 CTGATGCTGCATCTGCTGAGAGCTTTGCACCAATTGCAC 25092745 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 172620452157 Database: Jm3101_genome.fa Posted date: Apr 26, 2019 3:00 PM Number of letters in database: 527,895,757 Number of sequences in database: 154 Matrix: blastn matrix 2 -3 Gap Penalties: Existence: 5, Extension: 2