BLAST Results
BLASTN 2.2.28+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jm3101_genome.fa 154 sequences; 527,895,757 total letters Query= Length=304 Score E Sequences producing significant alignments: (Bits) Value lcl|Jm6D 527 2e-148 lcl|Jm2S 311 3e-83 lcl|Jm2D 297 6e-79 lcl|Jm3S 77.0 9e-13 lcl|Jm1D 39.2 0.24 lcl|Jm8S 35.6 2.9 lcl|Jm7D 35.6 2.9 >Query1 on lcl|Jm6D| Query1 on lcl|Jm6D Length=38364907 Score = 527 bits (584), Expect = 2e-148 Identities = 298/302 (99%), Gaps = 0/302 (0%) Strand=Plus/Plus Query 3 AAGGAGCAGGGAGTTAGAGGTTTCTTCAAGGGTTGGGTGCCCACTTTTCTAGGTTACAGT 62 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 332663 AAGGAGCAGGGAGTTAGAGGTTTCTTCAAGGGTTGGGTGCCCACTTTTCTTGGTTACAGT 332722 Query 63 GCGCAGGGCGCCTGCAAATATGGACTTTACGAGTTTTTTAAGAAGTACTACTCGGACATT 122 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 332723 GCGCAGGGCGCCTGCAAATATGGACTTTACGAGTTTTTTAAGAAGTACTACTCGGACATT 332782 Query 123 GCCGGGCCTGAGTATGCAACCAAGTACAAAACCTTGATCTATCTTGCTGGTTCTGCTTCT 182 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 332783 GCCGGGCCTGAGTATGCAACCAAGTACAAAACCTTGATCTATCTTGCTGGTTCAGCTTCT 332842 Query 183 GCCGAAGTGATTGCTGATGTTGCCCTCTGCCCCATGGAGGCTGTGAAAGTTCGTGTCCAA 242 |||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 332843 GCCGAACTGATTGCTGATGTTGCCCTCTGCCCCATGGAGGCTTTGAAAGTTCGTGTCCAA 332902 Query 243 ACTCAGCCTGGGTTTGCCCGAGGTTTGTCAGACGGACTTCCCAAGTTCATCAAGACTGAA 302 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 332903 ACTCAGCCTGGGTTTGCCCGAGGTTTGTCAGACGGACTTCCCAAGTTCATCAAGACTGAA 332962 Query 303 GG 304 || Sbjct 332963 GG 332964 >Query1 on lcl|Jm2S| Query1 on lcl|Jm2S Length=34707362 Score = 311 bits (344), Expect = 3e-83 Identities = 250/302 (83%), Gaps = 0/302 (0%) Strand=Plus/Plus Query 3 AAGGAGCAGGGAGTTAGAGGTTTCTTCAAGGGTTGGGTGCCCACTTTTCTAGGTTACAGT 62 ||||||||||| | ||||| ||||||| |||||||||||| || || || ||||||||| Sbjct 199972 AAGGAGCAGGGCATCAGAGGCTTCTTCAGGGGTTGGGTGCCAACCTTGCTTGGTTACAGT 200031 Query 63 GCGCAGGGCGCCTGCAAATATGGACTTTACGAGTTTTTTAAGAAGTACTACTCGGACATT 122 || ||||| |||||||| | |||| | || || || |||||||| |||||||| |||||| Sbjct 200032 GCTCAGGGTGCCTGCAAGTTTGGATTCTATGAATTCTTTAAGAAATACTACTCTGACATT 200091 Query 123 GCCGGGCCTGAGTATGCAACCAAGTACAAAACCTTGATCTATCTTGCTGGTTCTGCTTCT 182 || || |||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 200092 GCTGGACCTGAGTATGCAACCAAGTACAAAACCTTGATCTATCTTGCTGGTTCTGCATCT 200151 Query 183 GCCGAAGTGATTGCTGATGTTGCCCTCTGCCCCATGGAGGCTGTGAAAGTTCGTGTCCAA 242 || || || ||||| || |||| || ||||| | ||||| ||||| || || || ||| Sbjct 200152 GCTGAGGTCATTGCGGACATTGCTCTTTGCCCTTTTGAGGCAGTGAAGGTCCGAGTTCAA 200211 Query 243 ACTCAGCCTGGGTTTGCCCGAGGTTTGTCAGACGGACTTCCCAAGTTCATCAAGACTGAA 302 ||||||||||| ||||| ||||| | ||||| || ||||| ||||| | ||| | ||| Sbjct 200212 ACTCAGCCTGGTTTTGCTAGAGGTCTTTCAGATGGGCTTCCGAAGTTTGTTAAGTCGGAA 200271 Query 303 GG 304 || Sbjct 200272 GG 200273 Score = 37.4 bits (40), Expect = 0.83 Identities = 20/20 (100%), Gaps = 0/20 (0%) Strand=Plus/Plus Query 165 CTTGCTGGTTCTGCTTCTGC 184 |||||||||||||||||||| Sbjct 391042 CTTGCTGGTTCTGCTTCTGC 391061 >Query1 on lcl|Jm2D| Query1 on lcl|Jm2D Length=43614719 Score = 297 bits (328), Expect = 6e-79 Identities = 247/302 (82%), Gaps = 0/302 (0%) Strand=Plus/Plus Query 3 AAGGAGCAGGGAGTTAGAGGTTTCTTCAAGGGTTGGGTGCCCACTTTTCTAGGTTACAGT 62 ||||| ||||| | ||||| ||||||| ||||||||| || || || || || |||||| Sbjct 373006 AAGGATCAGGGCATCAGAGGCTTCTTCAGGGGTTGGGTACCAACCTTGCTTGGCTACAGT 373065 Query 63 GCGCAGGGCGCCTGCAAATATGGACTTTACGAGTTTTTTAAGAAGTACTACTCGGACATT 122 || ||||| || ||||| | |||| | ||||| || ||||||||||||||||| |||||| Sbjct 373066 GCTCAGGGTGCTTGCAAGTTTGGATTCTACGAATTCTTTAAGAAGTACTACTCTGACATT 373125 Query 123 GCCGGGCCTGAGTATGCAACCAAGTACAAAACCTTGATCTATCTTGCTGGTTCTGCTTCT 182 || || |||||||||||| |||||||||| |||||||||||||||||||||||||| ||| Sbjct 373126 GCTGGACCTGAGTATGCATCCAAGTACAAGACCTTGATCTATCTTGCTGGTTCTGCATCT 373185 Query 183 GCCGAAGTGATTGCTGATGTTGCCCTCTGCCCCATGGAGGCTGTGAAAGTTCGTGTCCAA 242 ||||| || ||||| ||| |||| || ||||| | ||||| ||||| || || || ||| Sbjct 373186 GCCGAGGTCATTGCAGATATTGCACTTTGCCCTTTCGAGGCAGTGAAGGTCCGAGTTCAA 373245 Query 243 ACTCAGCCTGGGTTTGCCCGAGGTTTGTCAGACGGACTTCCCAAGTTCATCAAGACTGAA 302 || |||||||| ||||| ||||| | ||||| || ||||| ||||| | || ||||| Sbjct 373246 ACACAGCCTGGTTTTGCTAGAGGTCTTTCAGATGGGCTTCCTAAGTTTGTTAAATCTGAA 373305 Query 303 GG 304 || Sbjct 373306 GG 373307 Score = 35.6 bits (38), Expect = 2.9 Identities = 19/19 (100%), Gaps = 0/19 (0%) Strand=Plus/Minus Query 166 TTGCTGGTTCTGCTTCTGC 184 ||||||||||||||||||| Sbjct 13696073 TTGCTGGTTCTGCTTCTGC 13696055 >Query1 on lcl|Jm3S| Query1 on lcl|Jm3S Length=27832763 Score = 77.0 bits (84), Expect = 9e-13 Identities = 62/75 (83%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 176 TGCTTCTGCCGAAGTGATTGCTGATGTTGCCCTCTGCCCCATGGAGGCTGTGAAAGTTCG 235 ||| ||||| |||| |||||||||| || ||||| || | || |||||||||||||| Sbjct 22583731 TGCATCTGCTCAAGTTTTTGCTGATGTGGCTCTCTGTCCTTTCGAAGCTGTGAAAGTTCG 22583672 Query 236 TGTCCAAACTCAGCC 250 ||| ||||||||||| Sbjct 22583671 TGTTCAAACTCAGCC 22583657 >Query1 on lcl|Jm1D| Query1 on lcl|Jm1D Length=49856174 Score = 39.2 bits (42), Expect = 0.24 Identities = 31/36 (86%), Gaps = 1/36 (3%) Strand=Plus/Minus Query 88 TTTACGAGTTTTTTAAGAAGTACTACTCGGACATTG 123 ||||||| |||||||| |||||||||| |||||| Sbjct 47329236 TTTACGAACGTTTTAAGA-GTACTACTCGTACATTG 47329202 Score = 35.6 bits (38), Expect = 2.9 Identities = 22/24 (92%), Gaps = 0/24 (0%) Strand=Plus/Plus Query 77 CAAATATGGACTTTACGAGTTTTT 100 ||||||||||| ||| |||||||| Sbjct 47135913 CAAATATGGACCTTATGAGTTTTT 47135936 >Query1 on lcl|Jm8S| Query1 on lcl|Jm8S Length=19962766 Score = 35.6 bits (38), Expect = 2.9 Identities = 25/29 (86%), Gaps = 0/29 (0%) Strand=Plus/Minus Query 3 AAGGAGCAGGGAGTTAGAGGTTTCTTCAA 31 ||||||||||| |||| || |||||| || Sbjct 10686111 AAGGAGCAGGGTGTTACAGCTTTCTTAAA 10686083 >Query1 on lcl|Jm7D| Query1 on lcl|Jm7D Length=26765518 Score = 35.6 bits (38), Expect = 2.9 Identities = 22/24 (92%), Gaps = 0/24 (0%) Strand=Plus/Plus Query 151 AAACCTTGATCTATCTTGCTGGTT 174 ||| |||||||| ||||||||||| Sbjct 15100664 AAAACTTGATCTCTCTTGCTGGTT 15100687 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 145170105025 Database: Jm3101_genome.fa Posted date: Apr 26, 2019 3:00 PM Number of letters in database: 527,895,757 Number of sequences in database: 154 Matrix: blastn matrix 2 -3 Gap Penalties: Existence: 5, Extension: 2