BLAST Results
BLASTN 2.2.28+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: JrSerr_genome.fa 73 sequences; 534,671,929 total letters Query= NC_002753.1:172702-174741 18SrRNA [organism=Guillardia theta] [GeneID=2673707] [chromosome=2] Length=2040 Score E Sequences producing significant alignments: (Bits) Value lcl|Jr8D 1063 0.0 lcl|Jr4S 1063 0.0 lcl|JrScfU0001 985 0.0 lcl|Jr8S 829 0.0 lcl|Jr6D 437 2e-120 lcl|Jr2D 363 3e-98 lcl|Jr3D 235 1e-59 lcl|Jr5D 89.7 1e-15 lcl|Jr4D 66.2 1e-08 lcl|Jr6S 50.0 0.001 lcl|Jr1D 50.0 0.001 lcl|Jr5S 44.6 0.041 lcl|Jr7S 42.8 0.14 lcl|Jr7D 41.0 0.50 lcl|Jr2S 39.2 1.8 lcl|Jr1S 39.2 1.8 lcl|Jr3S 37.4 6.1 >NC_002753.1:172702-174741 on lcl|Jr8D| NC_002753.1:172702-174741 on lcl|Jr8D Length=35197335 Score = 1063 bits (1178), Expect = 0.0 Identities = 1189/1565 (76%), Gaps = 74/1565 (5%) Strand=Plus/Minus Query 492 ATCATTCAAATTTCTGCCCTATCAACTTTCGATGGTTGGGTAGTGGCCAACCATGGTGTT 551 ||||||||||||||| ||||||||||||||||| || || ||| |||| || |||||| | Sbjct 18415464 ATCATTCAAATTTCTACCCTATCAACTTTCGATTGTAGGATAGAGGCCTACAATGGTGGT 18415405 Query 552 GACGGGTA-CGGGGAATTAGGGTTCGATTCCGGAGAGGGAGCCTGAGAGATGGCTACCAC 610 | ||||| | | |||||| ||||||||||| ||||||||| ||||| ||||| ||||| Sbjct 18415404 AATGGGTAACAGAGAATTATGGTTCGATTCCAAAGAGGGAGCTTGAGAAATGGCCACCAC 18415345 Query 611 ATCCAAGGAAGGCAGCAGGCGCGAAAATTACCCAATCCTGATTCAGGGAGGTAGCGACAA 670 ||||||||||||||||||| | | ||||||||||||||||| ||||||||| | ||| Sbjct 18415344 ATCCAAGGAAGGCAGCAGGGGTGCAAATTACCCAATCCTGACATGGGGAGGTAGTGTCAA 18415285 Query 671 GAAATAACGGTAGTGGACTCGTTCGAGTCTGCTCATCGGAATGAGGATAGTTTACACCCC 730 ||||||| ||| || ||| | ||||| || | || |||||||| | | | || | ||| Sbjct 18415284 TAAATAACAATAGCGGGCTCTTACGAGTTTGGTAATTGGAATGAGTACAATCTAAATCCC 18415225 Query 731 TTCTCGAGGATCCATTGGAGGGCAAGTCTGGTGCCAGCAGCCGCGGTAACTCCAGCTCCA 790 || |||||||||||||||||||| |||| ||||||||| |||||||| || ||||||| Sbjct 18415224 TTAACGAGGATCCATTGGAGGGCACGTCTTATGCCAGCAGTCGCGGTAATTCTAGCTCCA 18415165 Query 791 ATAGCGTATACTAAAGTTGCTGCAGTTAAAAAGCTCGTAGTCGAATTGGATCATAGAGAG 850 |||| ||||| | |||||| ||||| ||||||||||||||| |||||| | || | Sbjct 18415164 ATAGTGTATATTTAAGTTGTTGCAGCTAAAAAGCTCGTAGT-----TGGATCTTGGATTG 18415110 Query 851 GAGAGTCGCGCGCACTCCCTCTGGTTGAGTGGACGCGCGCGCTCTTTCTGTGATCAACCT 910 | || ||| | || ||||| ||| || || || || | ||| ||| Sbjct 18415109 GGCAGA---GCGGTCAGCCCCTGGT---GTGCAC---CGGTCTGTTCATCCCATCTACCG 18415059 Query 911 TTCTGGGAGGGTCT------CTGAAGAGGATGCCTCTGTATTCAGACCCCTCTTGGATGT 964 | || | || || || || || || | ||| |||| || Sbjct 18415058 ----GCGATGCGCTTTTGGCCTTAACTGGCTGGGTC---------ATGCCT-TTGG-TGC 18415014 Query 965 ATTTTACTGTGAACAAAATAGAGTGTTCATGGCAGGCCTTTTGAATTAGGCTT-AGATAC 1023 | ||||| |||| ||| |||||| ||| ||| | || | |||| | |||| Sbjct 18415013 -TGTTACTTTGAAGAAATTAGAGTACTCAAAGCAAGGCT--------ACGCTTTATATAC 18414963 Query 1024 CATAGCATGGAATAATAGAATAGGACTTCCGGTTCTGTTTTGTTGGTTTTTGG-AGCCGA 1082 |||||||| |||| | ||| || ||| ||| || || |||||| || || | | || Sbjct 18414962 ATTAGCATGGGATAACATCATAAGATTTC-GGTCCTATTGTGTTGGCCTTCGGTATCAGA 18414904 Query 1083 GGTAATGATTAACAGGGATAGTTG--GGGGCACCCGTACTCCGTTGTCAGAGGTGAAATT 1140 | |||||||||||||| | || | |||||| | || | | | |||||| |||||||| Sbjct 18414903 G-TAATGATTAACAGGAACAGCCGAGGGGGCATTCCTATTTCATAGTCAGAAGTGAAATT 18414845 Query 1141 CATGGATTAACGGAAGACGAACAACTGCGAAAGCATCTGCCAAGGATGTTTTCATTGATC 1200 |||||| | | | || |||||||||||||||||| |||||| |||||||||||| ||| Sbjct 18414844 ATTGGATTTATGAATGATGAACAACTGCGAAAGCATTTGCCAAAGATGTTTTCATTAATC 18414785 Query 1201 AAGAACGAAAGTTAGGGGATCGAAGACGATTAGATACCGTCGTAGTCTTAACCATAAACT 1260 ||||| |||| || |||| |||| |||||| || || |||| |||||| || ||||| Sbjct 18414784 AAGAATGAAAATTTGGGGCTCGATGACGATCAGGTATCGTCCTAGTCTCAATAGTAAACG 18414725 Query 1261 ATGCCAACTGGGGATTGGTAGAAGTACCAAATAAACGACTCTATCAGCACCCTAAGAGAA 1320 ||| | || ||||| | || || | | || |||||| | ||||| | ||||| Sbjct 18414724 ATGTCGACCAGGGATCAATGGATGTTGCT--TTAAGGACTCTGCCGGCACCTCATGAGAA 18414667 Query 1321 ATCAAAGTCTTTAGGTTCTGGGGGGAGTATGGTCGCAAGGCTGAAACTTAAAGGAATTGA 1380 |||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 18414666 ATCAAAGTCTTTGGGTTTTGGGGGGAGTATGGTCGCAAGGCTGAAACTTAAAGGAATTGA 18414607 Query 1381 CGGAAGGGCACCACCAGGCGTGGAGCCTGCGGCTTAATTTGACTCAACACGGGGAACCTT 1440 ||||||||||||||||| |||||| |||| ||||||||||||| || |||||| ||| Sbjct 18414606 TGGAAGGGCACCACCAGGAGTGGAGTCTGCAGCTTAATTTGACTAAATGTGGGGAAACTT 18414547 Query 1441 ACCAGGTCCGGACATAGGGAGGATTGACAGATTGAGAGCTCTTTCTTGATTCTATGGGTG 1500 || |||||| ||||||| |||||||||| | ||||||||||||||||||||| ||||| Sbjct 18414546 ACTAGGTCCAGACATAGTAAGGATTGACAAACTGAGAGCTCTTTCTTGATTCTGTGGGTA 18414487 Query 1501 GTGGTGCATGGCCGTTCTTAGTTGGTGGAGTGATTTGTCTGGTTAATTCCGTTAACGAGC 1560 |||||||||||||||||||||||||||||| |||||||||||||||| | ||||| | | Sbjct 18414486 GTGGTGCATGGCCGTTCTTAGTTGGTGGAGCAATTTGTCTGGTTAATTTCATTAACCAAC 18414427 Query 1561 GAGACCTTGACCTGCTAATTAGCCCCGTCGGTGGCAACGCCTTCGTGATG---GCTTCTT 1617 ||||||| |||||||| |||| || || || | ||||| || | || | || Sbjct 18414426 GAGACCTCAGCCTGCTAACTAGCTATGT-GGAGGTGA--CCTTC-TGCGGCCAGCATTTT 18414371 Query 1618 AGAGGGACGATCCGCGTTATTAGTGGATGGAGGAATGAGGCAATAACAGGTCTGTGATGC 1677 ||||| || || || ||||| | ||| | | ||||||||||||||||||||||| Sbjct 18414370 AGAGGCACTATGGCCG--ATTAGGCCAAGGAAGTTTAAGGCAATAACAGGTCTGTGATGC 18414313 Query 1678 CCTTAGATGTCCTGGGCCGCACGCGCGCTACAATGGTGCAGACAATGAGTGCTGCTCCTG 1737 || |||||||| |||||||||||||||||||| || || | ||| | ||| | Sbjct 18414312 CCATAGATGTCTTGGGCCGCACGCGCGCTACACTGATGTATTCAA-CACAGCT-----TT 18414259 Query 1738 GTCCGAAAGGATTGGGGAATCTTGGAAACTGCATCGTGATAGGGATAGATGATTGCAATT 1797 | |||| ||| |||| |||| | |||| | ||| ||||| ||||||||| ||||||||| Sbjct 18414258 GGCCGAGAGGCCTGGGTAATCGTTGAAATTTCATTGTGATGGGGATAGATCATTGCAATT 18414199 Query 1798 TTTCATCTTGAACGAGGAATGCCTTGTAAGCGCGAGTCATCAACTCGCGCTGAATACGTC 1857 || ||| ||| |||||| ||| |||||| |||||||||| ||||| ||| || ||| Sbjct 18414198 GTTGGTCTACAACAAGGAATTCCTAGTAAGCACGAGTCATCAGCTCGCATTGACTATGTC 18414139 Query 1858 CCTGCCCTTTGTACACACCGCCCGTCGCTCCTACCGATTGGATGGCCCGGTGAAATGCTC 1917 |||||||||||||||||| ||| || ||||| |||||||| |||| ||||||| || || Sbjct 18414138 CCTGCCCTTTGTACACACTGCCTGTTGCTCCAACCGATTGAATGGTTCGGTGAAGTGTTC 18414079 Query 1918 GGACG--AGTGTTCAGAGCCGCCACGATCGTGGCGCTCTTCCTCG-GAAGTGCAGTGAGC 1974 ||| | | | | | || | | | |||| | | | || ||||| || ||| | Sbjct 18414078 GGATGGAGGCGATTTGGGCAG-TTCTCTGCTGGCAATGT--CGCGAGAAGTCCACTGAAC 18414022 Query 1975 CTTGTCATCTAGAGGAAGGAGAAGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGG 2034 ||| |||| ||||||||||||| ||||||||| |||||||| ||||||||||||||||| Sbjct 18414021 CTTATCATTCAGAGGAAGGAGAAATCGTAACAATGTTTCCGTTGGTGAACCTGCGGAAGG 18413962 Query 2035 ATCAT 2039 ||||| Sbjct 18413961 ATCAT 18413957 Score = 1056 bits (1170), Expect = 0.0 Identities = 1187/1571 (76%), Gaps = 104/1571 (7%) Strand=Plus/Minus Query 492 ATCATTCAAATTTCTGCCCTATCAACTTTCGATGGTTGGGTAGTGGCCAACCATGGTGTT 551 ||||||||||||||||||||||||||||||||| || || ||| |||| || ||| || | Sbjct 18357657 ATCATTCAAATTTCTGCCCTATCAACTTTCGATTGTAGGATAGAGGCCTACAATGATGGT 18357598 Query 552 GACGGGTA-CGGGGAATTAGGGTTCGATTCCGGAGAGGGAGCCTGAGAGATGGCTACCAC 610 ||| |||| ||| |||||||| || ||||| |||||||||| |||||| | | ||||||| Sbjct 18357597 GACAGGTAACGGAGAATTAGGATTTGATTCTGGAGAGGGAGTCTGAGAAACGACTACCAC 18357538 Query 611 ATCCAAGGAAGGCAGCAGGCGCGAAAATTACCCAATCCTGATTCAGGGAGGTAGCGACAA 670 |||||| ||||||| |||| ||| |||||||||||||| || ||||||||||| || || Sbjct 18357537 ATCCAAAGAAGGCAACAGGTGCGCAAATTACCCAATCCAGACACAGGGAGGTAGTGATAA 18357478 Query 671 GAAATAACGGTAGTGGACTCGTTCGAGTCTGCTCATCGGAATGAGGATAGTTTACACCCC 730 ||||||| || ||| | | ||||| | || |||||||| | | | || | ||| Sbjct 18357477 TAAATAACAATACCAAGCTCTTACAAGTCTAGTAATTGGAATGAGTACAATCTAAATCCC 18357418 Query 731 TTCTCGAGGATCCATTGGAGGGCAAGTCTGGTGCCAGCAGCCGCGGTAACTCCAGCTCCA 790 || |||||||| ||||||||||||||||||||||||||| | |||| || ||||||| Sbjct 18357417 TTAGCGAGGATC-ATTGGAGGGCAAGTCTGGTGCCAGCAGTCATAGTAATTCTAGCTCCA 18357359 Query 791 ATAGCGTATACTAAAGTTGCTGCAGTTAAAAAGCTCGTAGTCGAATTGGATCATAGAGAG 850 ||| |||||| | |||||| ||||||||||||||||||||| |||||| | | | Sbjct 18357358 ATAACGTATATTTAAGTTGTTGCAGTTAAAAAGCTCGTAGT-----TGGATCTTGGGTTG 18357304 Query 851 GAGAGTCGCGCGCACTCCCTCTGGTTG--AGTGGAC-GCGCG-CGCTCTTTCT-GTGATC 905 | || ||| | || |||||| | || | || || | || | || | ||| Sbjct 18357303 GGCAGA---GCGGTCCGCCCCTGGTTTGCACCGGTCTGCTCGTCCCTTCTACTAGCGATG 18357247 Query 906 AACCTTTCTGGGAGGGTCTCTGAAGAGGATGCCTCTGTATTCAGACCCCTCTTGGATGTA 965 || | || | || || || || || || |||| | ||| Sbjct 18357246 CAC--TCCTAGC-------CTTAACTGGCTGGGTC-GTG--------CCTCCAG--TGT- 18357208 Query 966 TTTTACTGTGAACAAAATAGAGTGTTCATGGCAGGCCTTTTGAATTAGGCT-TAGATACC 1024 | ||||| |||| ||| ||||||| ||| ||| |||| | ||| || |||| Sbjct 18357207 TGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCT--------ACGCTCTATATACA 18357156 Query 1025 ATAGCATGGAATAATAGAATAGGACTTCCGGTTCTGTTTTGTTGGTTTTT-GGAGCCGAG 1083 |||||||| |||| | || ||| ||| ||| || | |||||| || ||| | ||| Sbjct 18357155 TTAGCATGGGATAACATCATTGGATTTC-GGTCCTACTGTGTTGGCCTTCAGGATCAGAG 18357097 Query 1084 GTAATGATTAACAGGGATAGTTGGGGGCACCCGTACTCCGTTGTCAGAGGTGAAATTCAT 1143 |||||||||| ||| | ||| |||||| | || | | | ||||||||||||||| | Sbjct 18357096 -TAATGATTAATAGGAACAGTCAGGGGCATTCATATTTCATACTCAGAGGTGAAATTCTT 18357038 Query 1144 GGATTAACGGAAGACGAACAACTGCGAAAGCATCTGCCAAGGATGTTTTCATTGATCAAG 1203 ||||| | | || ||||| |||||| ||||||| ||||| |||||||||||| |||||| Sbjct 18357037 GGATTTAGGAAACACGAATAACTGC-AAAGCATTAGCCAATGATGTTTTCATTAATCAAG 18356979 Query 1204 AACGAAAGTTAGGGGATCGAAGACGATTAGATACCGTCGTAGTCTTAACCATAAACTATG 1263 ||| |||||| |||| ||||||||||| |||||||||| |||||| |||||||||| ||| Sbjct 18356978 AACAAAAGTTGGGGGCTCGAAGACGATCAGATACCGTCCTAGTCTCAACCATAAACGATG 18356919 Query 1264 CCAACTGGGGATTGGTAGAAGTACCAAATAAACGACTCTATCAGCACCCTAAGAGAAATC 1323 | || |||| | || || | | || ||||| | | |||| || |||||||| Sbjct 18356918 CGGACCAAGGATCAGCGGATGTTGCT--TTAAGGACTCAACCGACACCTTATGAGAAATC 18356861 Query 1324 AAAGTCTTTAGGTTCTGGGGGGAGTATGGTCGCAAGGCTGAAACTTAAAGGAATTGACGG 1383 ||||||||| ||||| ||||||| ||||||||||||||||||||||| | |||||| || Sbjct 18356860 AAAGTCTTTGGGTTCCCGGGGGAGCATGGTCGCAAGGCTGAAACTTAATG-AATTGATGG 18356802 Query 1384 AAGGGCACCACCAGGCGTGGAGCCTGCGGCTTAATTTGACTCAACACGGGGAACCTTACC 1443 ||||||||||||||| ||||||||||||||||||||||||| ||||||||||| ||||| Sbjct 18356801 AAGGGCACCACCAGGAGTGGAGCCTGCGGCTTAATTTGACTTAACACGGGGAAACTTACT 18356742 Query 1444 AGGTCCGGACATAGGGAGGATTGACAGATTGAGAGCTCTTTCTTGATTCTATGGGTGGTG 1503 ||||| ||||| | |||||||||||| ||||||| ||||||||||||||||||||||| Sbjct 18356741 AGGTCTAGACATTGTAAGGATTGACAGACTGAGAGCACTTTCTTGATTCTATGGGTGGTG 18356682 Query 1504 GTGCATGGCCGTTCTTAGTTGGTGGAGTGATTTGTCTGGTTAATTCCGTTAACGAGCGAG 1563 |||||||||||||||||| | |||||| |||||||||||||||||||||||| ||||||| Sbjct 18356681 GTGCATGGCCGTTCTTAGGTTGTGGAGCGATTTGTCTGGTTAATTCCGTTAATGAGCGAG 18356622 Query 1564 ACCTTGACCTGCTAATTAGCCCCGTCGGTGGCAACGCCTTCGTGA-TGGCTTCTTAGAGG 1622 |||| |||||| | ||| ||| |||| ||| || |||||||||||| Sbjct 18356621 ACCTCAGCCTGCTTACTAG--CCGGAGGTG----ATTTTTCACGACCAGCTTCTTAGAGG 18356568 Query 1623 GACGAT--CCGCGTTATTAGTGGATGGAGGAATGAGGCAATAACAGGTCTGTGATGCCCT 1680 ||| || || | |||| ||||| | ||| ||||||| |||||||||||||||| Sbjct 18356567 GACTATGGCCAC----TTAGGCCATGGAAGTTTGACGCAATAATAGGTCTGTGATGCCCT 18356512 Query 1681 TAGATGTCCTGGGCCGCACGCGCGCTACAATGGTGCAGACAATGAGTGCTGCTCCTGGTC 1740 ||||||| |||||||||| |||||||||| | || | ||| |||| Sbjct 18356511 TAGATGTTCTGGGCCGCATGCGCGCTACACTAATGTATTCAACGAGT------------- 18356465 Query 1741 CGAAAGGATTGGGGAATCTTGGAAACTGCATCGTGATAGGGATAGATGATTGCAATTTTT 1800 ||| |||| |||||| |||| | |||| |||| ||||||||| ||||||||| || Sbjct 18356464 --TTAGGCCTGGGTAATCTTTGAAATTTCATCATGATGGGGATAGATCATTGCAATTGTT 18356407 Query 1801 CATCTTGAACGAGGAATGCCTTGTAAGCGCGAGTCATCAACTCGCGCTGAATACGTCCCT 1860 |||| || ||||||| ||| |||||| |||||||||||||| || || || |||||| Sbjct 18356406 GGTCTTCAATGAGGAATTCCTAGTAAGCACGAGTCATCAACTCACGTCGACTATGTCCCT 18356347 Query 1861 GCCCTTTGTACACACCGCCCGTCGCTCCTACCGATTGGATGGCCCGGTGAAATGCTCGGA 1920 ||||| ||||||||||||||||| ||||||| ||||| |||| |||||||| || ||||| Sbjct 18356346 GCCCTATGTACACACCGCCCGTCACTCCTACTGATTGAATGGTCCGGTGAAGTGTTCGGA 18356287 Query 1921 ------CGA------GTGTTCAGAGCCGCCACGATCGTGGCGCTCTTCCTCGGAAGTGCA 1968 ||| |||||| |||| || | || || ||||| Sbjct 18356286 TCTAGGCGATGTGGGTTGTTCACCGCCGACA------------ACGTCGTCAGAAGTCTG 18356239 Query 1969 GTGAGCCTTGTCATCTAGAGGAAGGAGAAGTCGTAACAAGGTTTCCGTAGGTGAACCTGC 2028 ||| |||| |||| |||| ||||||||||| ||||||||||||| ||||||||||||| Sbjct 18356238 CTGAACCTTATCATTTAGAAGAAGGAGAAGTTGTAACAAGGTTTCTATAGGTGAACCTGC 18356179 Query 2029 GGAAGGATCAT 2039 |||||||||| Sbjct 18356178 AGAAGGATCAT 18356168 Score = 389 bits (430), Expect = 8e-106 Identities = 331/402 (82%), Gaps = 12/402 (3%) Strand=Plus/Minus Query 1644 ATGGAGGAATGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTCCTGGGCCGCACGCGC 1703 ||||| | ||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 4697942 ATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGC 4697883 Query 1704 GCTACAATGGTGCAGACAATGAGTGCTGCTCCTGGTCCGAAAGGATTGGGGAATCTTGGA 1763 |||||| || || | ||| |||| ||| | |||| ||| |||| |||||| || Sbjct 4697882 GCTACACTGATGTATTCAACGAGTTTATAGCCTTGGCCGACAGGCCTGGGTAATCTTTGA 4697823 Query 1764 AACTGCATCGTGATAGGGATAGATGATTGCAATTTTTCATCTTGAACGAGGAATGCCTTG 1823 || | ||||||||| ||||||||| ||||||||| | |||| |||||||||| ||| | Sbjct 4697822 AATTTCATCGTGATGGGGATAGATCATTGCAATTGCTGGTCTTCAACGAGGAATTCCTAG 4697763 Query 1824 TAAGCGCGAGTCATCAACTCGCGCTGAATACGTCCCTGCCCTTTGTACACACCGCCCGTC 1883 |||||||||||||||| |||||| ||| |||||||||||||||||||||||||||||||| Sbjct 4697762 TAAGCGCGAGTCATCAGCTCGCGTTGACTACGTCCCTGCCCTTTGTACACACCGCCCGTC 4697703 Query 1884 GCTCCTACCGATTGGATGGCCCGGTGAAATGCTCGGA-CGA-GTGTTCAGAGCCG-CCAC 1940 |||||||||||||| |||| |||||||| || ||||| ||| | | | | || | ||| Sbjct 4697702 GCTCCTACCGATTGAATGGTCCGGTGAAGTGTTCGGATCGAGGCGATGTGGGCGGTTCAC 4697643 Query 1941 GATCGTGGCGCTCTTCCTCG---GAAGTGCAGTGAGCCTTGTCATCTAGAGGAAGGAGAA 1997 || || | | ||| ||||| || ||| |||| |||| |||||||||||||| Sbjct 4697642 -----TGCCG-GCAACGTCGCGAGAAGTCCACTGAACCTTATCATTTAGAGGAAGGAGAA 4697589 Query 1998 GTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCAT 2039 |||||||||||||||||||||||||||||| ||||||||||| Sbjct 4697588 GTCGTAACAAGGTTTCCGTAGGTGAACCTGTGGAAGGATCAT 4697547 Score = 143 bits (158), Expect = 6e-32 Identities = 129/161 (80%), Gaps = 1/161 (1%) Strand=Plus/Minus Query 18 AGTAGTCATATGCTTGTCTTAAGGATTAAGCCATGCATGTCTCAGTACAAACAAGATTGT 77 ||||||||||||||||||| || ||||||||| ||||||| | |||| ||| | | Sbjct 18357934 AGTAGTCATATGCTTGTCTCAAAGATTAAGCCTTGCATGTGTAAGTATGAACTAATTCAG 18357875 Query 78 ACCGTGAAACTGCGAATGGCTCAATACAACAGTTATAGTTTATTTGATCGTGCGGGGCTA 137 || |||||||||||||||||||| || | |||||||||||| |||||| || |||| Sbjct 18357874 ACTGTGAAACTGCGAATGGCTCATTAAATCAGTTATAGTTTGTTTGATGGT-ATCTGCTA 18357816 Query 138 CGTGGATAACCGTAGGAATTCTAGAGCTAATACATGCACCA 178 | |||||| | ||| |||||||||||||||| |||| || Sbjct 18357815 CTCGGATAATCATAGTAATTCTAGAGCTAATATGTGCAACA 18357775 Score = 116 bits (128), Expect = 8e-24 Identities = 117/151 (77%), Gaps = 1/151 (1%) Strand=Plus/Minus Query 28 TGCTTGTCTTAAGGATTAAGCCATGCATGTCTCAGTACAAACAAGATTGTACCGTGAAAC 87 || |||||| | ||||||||||||||||| | |||| || | | | ||||||| Sbjct 18415731 TGATTGTCTCGAAGATTAAGCCATGCATGTGTAAGTATGAATTAATTCAAATTGTGAAAC 18415672 Query 88 TGCGAATGGCTCAATACAACAGTTATAGTTTATTTGATCGTGCGGGGCTACGTGGATAAC 147 ||||||||||||| || | |||||||||||| |||||| || ||||| ||||| Sbjct 18415671 TGCGAATGGCTCATTAAATCAGTTATAGTTTGTTTGATAGT-ATCTGCTACTCCAATAAC 18415613 Query 148 CGTAGGAATTCTAGAGCTAATACATGCACCA 178 | ||| |||||||||||||||||||||| || Sbjct 18415612 CATAGTAATTCTAGAGCTAATACATGCAACA 18415582 Score = 89.7 bits (98), Expect = 1e-15 Identities = 69/81 (85%), Gaps = 1/81 (1%) Strand=Plus/Minus Query 482 CCGGCGGTAAATCATTCAAATTTCTGCCCTATCAACTTTCGATGGTTGGGTAGTGGCCAA 541 |||||| | ||||||||||||||||||||||||||||||||| || || ||| |||| | Sbjct 18358675 CCGGCGA-ATATCATTCAAATTTCTGCCCTATCAACTTTCGATTGTGGGATAGAGGCCTA 18358617 Query 542 CCATGGTGTTGACGGGTACGG 562 | |||||| |||| |||| || Sbjct 18358616 CAATGGTGGTGACAGGTATGG 18358596 Score = 55.4 bits (60), Expect = 2e-05 Identities = 41/48 (85%), Gaps = 0/48 (0%) Strand=Plus/Minus Query 17 CAGTAGTCATATGCTTGTCTTAAGGATTAAGCCATGCATGTCTCAGTA 64 || ||| ||||||||||||| || |||||||||| |||||| | |||| Sbjct 18368152 CATTAGGCATATGCTTGTCTCAAAGATTAAGCCACGCATGTGTAAGTA 18368105 Score = 42.8 bits (46), Expect = 0.14 Identities = 23/23 (100%), Gaps = 0/23 (0%) Strand=Plus/Minus Query 424 ATCATAATAACtttttttttttt 446 ||||||||||||||||||||||| Sbjct 409691 ATCATAATAACTTTTTTTTTTTT 409669 Score = 42.8 bits (46), Expect = 0.14 Identities = 32/35 (91%), Gaps = 2/35 (6%) Strand=Plus/Plus Query 418 GGATGAATCA-TAAT-AACtttttttttttttttt 450 |||||||||| |||| |||||||||| |||||||| Sbjct 28040515 GGATGAATCATTAATAAACTTTTTTTGTTTTTTTT 28040549 Score = 42.8 bits (46), Expect = 0.14 Identities = 32/35 (91%), Gaps = 2/35 (6%) Strand=Plus/Plus Query 418 GGATGAATCA-TAAT-AACtttttttttttttttt 450 |||||||||| |||| |||||||||| |||||||| Sbjct 28082452 GGATGAATCATTAATAAACTTTTTTTGTTTTTTTT 28082486 Score = 41.0 bits (44), Expect = 0.50 Identities = 25/27 (93%), Gaps = 0/27 (0%) Strand=Plus/Minus Query 422 GAATCATAATAACtttttttttttttt 448 |||||||||||| ||||||||| |||| Sbjct 10215413 GAATCATAATAATTTTTTTTTTCTTTT 10215387 Score = 39.2 bits (42), Expect = 1.8 Identities = 67/96 (70%), Gaps = 1/96 (1%) Strand=Plus/Minus Query 1361 CTGAAACTTAAAGGAATTGACGGAAGGGCACCACCAGGCGTGGAGCCTGCGGCTTAATTT 1420 |||||||| || | |||||| | || | ||| || ||||||| || || |||||| Sbjct 25389320 CTGAAACTCAATGCTATTGACCGG-GGCCTGCACAAGCGGTGGAGCATGTGGTTTAATTC 25389262 Query 1421 GACTCAACACGGGGAACCTTACCAGGTCCGGACATA 1456 | ||||| ||||||||||| | |||||| Sbjct 25389261 AATAAAACACACAAAACCTTACCAGCCCTTGACATA 25389226 Score = 37.4 bits (40), Expect = 6.1 Identities = 27/30 (90%), Gaps = 1/30 (3%) Strand=Plus/Plus Query 285 ACAACGAAAAGGTTGAGCCACC-AAGGTCG 313 ||||| |||| ||||||||||| ||||||| Sbjct 14800392 ACAACCAAAAAGTTGAGCCACCAAAGGTCG 14800421 Score = 37.4 bits (40), Expect = 6.1 Identities = 25/28 (89%), Gaps = 0/28 (0%) Strand=Plus/Minus Query 1790 TTGCAATTTTTCATCTTGAACGAGGAAT 1817 ||||||||||||||||| | |||| ||| Sbjct 32499102 TTGCAATTTTTCATCTTCATCGAGAAAT 32499075 >NC_002753.1:172702-174741 on lcl|Jr4S| NC_002753.1:172702-174741 on lcl|Jr4S Length=30027985 Score = 1063 bits (1178), Expect = 0.0 Identities = 891/1081 (82%), Gaps = 31/1081 (3%) Strand=Plus/Plus Query 968 TTACTGTGAACAAAATAGAGTGTTCATGGCAGGCCTTTTGAATTAGGCTTAG-ATACCAT 1026 ||||| |||| ||| ||||||| ||| ||| |||| | ||| | |||| | Sbjct 17964054 TTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCT--------ACGCTCTGTATACATT 17964105 Query 1027 AGCATGGAATAATAGAATAGGACTTCCGGTTCTGTTTTGTTGGTTTTTGGAGCCGAGGTA 1086 ||||||| |||| | |||||| ||| ||| || || |||||| || || || ||| Sbjct 17964106 AGCATGGGATAACATCATAGGATTTC-GGTCCTATTGTGTTGGCCTTCGGGATCGGAGTA 17964164 Query 1087 ATGATTAACAGGGATAGTTGGGGGCACCCGTACTCCGTTGTCAGAGGTGAAATTCATGGA 1146 |||||||||||| | ||| ||||||| |||| | | | |||||||||||||||| |||| Sbjct 17964165 ATGATTAACAGGAACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGA 17964224 Query 1147 TTAACGGAAGACGAACAACTGCGAAAGCATCTGCCAAGGATGTTTTCATTGATCAAGAAC 1206 || | | ||||||||||||||||||||||| ||||||||||||||||||| ||||||||| Sbjct 17964225 TTTATGAAAGACGAACAACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCAAGAAC 17964284 Query 1207 GAAAGTTAGGGGATCGAAGACGATTAGATACCGTCGTAGTCTTAACCATAAACTATGCCA 1266 ||||||| |||| ||||||||||| |||||||||| |||||| |||||||||| ||||| Sbjct 17964285 GAAAGTTGGGGGCTCGAAGACGATCAGATACCGTCCTAGTCTCAACCATAAACGATGCCG 17964344 Query 1267 ACTGGGGATTGGTAGAAGTACCAAATAAACGACTCTATCAGCACCCTAAGAGAAATCAAA 1326 || ||||| || || || | | || ||||| | ||||| || ||||||||||| Sbjct 17964345 ACCAGGGATCGGCGGATGTTGCT--TTAAGGACTCCGCCGGCACCTTATGAGAAATCAAA 17964402 Query 1327 GTCTTTAGGTTCTGGGGGGAGTATGGTCGCAAGGCTGAAACTTAAAGGAATTGACGGAAG 1386 |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 17964403 GTCTTTGGGTTCCGGGGGGAGTATGGTCGCAAGGCTGAAACTTAAAGGAATTGACGGAAG 17964462 Query 1387 GGCACCACCAGGCGTGGAGCCTGCGGCTTAATTTGACTCAACACGGGGAACCTTACCAGG 1446 |||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 17964463 GGCACCACCAGGAGTGGAGCCTGCGGCTTAATTTGACTCAACACGGGGAAACTTACCAGG 17964522 Query 1447 TCCGGACATAGGGAGGATTGACAGATTGAGAGCTCTTTCTTGATTCTATGGGTGGTGGTG 1506 ||| ||||||| |||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 17964523 TCCAGACATAGTAAGGATTGACAGACTGAGAGCTCTTTCTTGATTCTATGGGTGGTGGTG 17964582 Query 1507 CATGGCCGTTCTTAGTTGGTGGAGTGATTTGTCTGGTTAATTCCGTTAACGAGCGAGACC 1566 |||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| Sbjct 17964583 CATGGCCGTTCTTAGTTGGTGGAGCGATTTGTCTGGTTAATTCCGTTAACGAACGAGACC 17964642 Query 1567 TTGACCTGCTAATTAGCCCCGTCGGTGGCAACGCCTTCG-TGATGGCTTCTTAGAGGGAC 1625 | |||||||| |||| | ||| || || | | || | ||||||||||||||| Sbjct 17964643 TCAGCCTGCTAACTAGCTATG-CGGAGGTGAC-CTTCCGCGGCCAGCTTCTTAGAGGGAC 17964700 Query 1626 GAT--CCGCGTTATTAGTGGATGGAGGAATGAGGCAATAACAGGTCTGTGATGCCCTTAG 1683 || |||| |||| | ||| | ||||||||||||||||||||||||||||||| Sbjct 17964701 TATGGCCGC----TTAGGCCAAGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAG 17964756 Query 1684 ATGTCCTGGGCCGCACGCGCGCTACAATGGTGCAGACAATGAGTGCTGCTCCTGGTCCGA 1743 |||| ||||||||||||||||||||| || || | ||| |||| ||| | |||| Sbjct 17964757 ATGTTCTGGGCCGCACGCGCGCTACACTGATGTATTCAACGAGTTTATAGCCTTGGCCGA 17964816 Query 1744 AAGGATTGGGGAATCTTGGAAACTGCATCGTGATAGGGATAGATGATTGCAATTTTTCAT 1803 ||| ||| |||||| |||| | ||||||||| ||||||||| ||||||||| || | Sbjct 17964817 CAGGCCCGGGTAATCTTTGAAATTTCATCGTGATGGGGATAGATCATTGCAATTGTTGGT 17964876 Query 1804 CTTGAACGAGGAATGCCTTGTAAGCGCGAGTCATCAACTCGCGCTGAATACGTCCCTGCC 1863 ||| |||||||||| ||| ||||||||||||||||| |||||| ||| |||||||||||| Sbjct 17964877 CTTCAACGAGGAATTCCTAGTAAGCGCGAGTCATCAGCTCGCGTTGACTACGTCCCTGCC 17964936 Query 1864 CTTTGTACACACCGCCCGTCGCTCCTACCGATTGGATGGCCCGGTGAAATGCTCGGA-CG 1922 |||||||||||||||||||||||||||||||||| |||| |||||||| || ||||| || Sbjct 17964937 CTTTGTACACACCGCCCGTCGCTCCTACCGATTGAATGGTCCGGTGAAGTGTTCGGATCG 17964996 Query 1923 A-GTGTTCAGAGCCGCCACGATCGTGGCGCTCTTCCTCG---GAAGTGCAGTGAGCCTTG 1978 | | | | | || | ||| || | | ||| ||||| || ||| |||| Sbjct 17964997 AGGCGATGTGGGC-----GGTTCGCTGCCGGCAACGTCGCGAGAAGTCCACTGAACCTTA 17965051 Query 1979 TCATCTAGAGGAAGGAGAAGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCA 2038 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 17965052 TCATTTAGAGGAAGGAGAAGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCA 17965111 Query 2039 T 2039 | Sbjct 17965112 T 17965112 Score = 437 bits (484), Expect = 2e-120 Identities = 309/352 (88%), Gaps = 1/352 (0%) Strand=Plus/Plus Query 481 GCCGGCGGTAAATCATTCAAATTTCTGCCCTATCAACTTTCGATGGTTGGGTAGTGGCCA 540 ||||||| ||||||||||||||||||||||||||||||||| || || ||| |||| Sbjct 17963590 GCCGGCGACGCATCATTCAAATTTCTGCCCTATCAACTTTCGATTGTAGGATAGAGGCCT 17963649 Query 541 ACCATGGTGTTGACGGGTA-CGGGGAATTAGGGTTCGATTCCGGAGAGGGAGCCTGAGAG 599 || |||||| ||||||||| ||| ||||||||||||||||||||||||||||||||||| Sbjct 17963650 ACAATGGTGGTGACGGGTAACGGAGAATTAGGGTTCGATTCCGGAGAGGGAGCCTGAGAA 17963709 Query 600 ATGGCTACCACATCCAAGGAAGGCAGCAGGCGCGAAAATTACCCAATCCTGATTCAGGGA 659 | |||||||||||||||||||||||||||||||| ||||||||||||||||| | |||| Sbjct 17963710 ACGGCTACCACATCCAAGGAAGGCAGCAGGCGCGCAAATTACCCAATCCTGACACGGGGA 17963769 Query 660 GGTAGCGACAAGAAATAACGGTAGTGGACTCGTTCGAGTCTGCTCATCGGAATGAGGATA 719 ||||| ||||| ||||||| || || ||| | |||||||| | || |||||||| | | Sbjct 17963770 GGTAGTGACAATAAATAACAATACCGGGCTCTTACGAGTCTGGTAATTGGAATGAGTACA 17963829 Query 720 GTTTACACCCCTTCTCGAGGATCCATTGGAGGGCAAGTCTGGTGCCAGCAGCCGCGGTAA 779 | || | ||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 17963830 ATCTAAATCCCTTAACGAGGATCCATTGGAGGGCAAGTCTGGTGCCAGCAGCCGCGGTAA 17963889 Query 780 CTCCAGCTCCAATAGCGTATACTAAAGTTGCTGCAGTTAAAAAGCTCGTAGT 831 |||||||||||||||||||| | |||||| ||||||||||||||||||||| Sbjct 17963890 TTCCAGCTCCAATAGCGTATATTTAAGTTGTTGCAGTTAAAAAGCTCGTAGT 17963941 Score = 192 bits (212), Expect = 1e-46 Identities = 150/178 (84%), Gaps = 1/178 (1%) Strand=Plus/Plus Query 1 ACCTGGTTGATCCTGCCAGTAGTCATATGCTTGTCTTAAGGATTAAGCCATGCATGTCTC 60 |||||||||||||||||||||||||||||||||||| || ||||||||||||||||| | Sbjct 17963307 ACCTGGTTGATCCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAGCCATGCATGTGTA 17963366 Query 61 AGTACAAACAAGATTGTACCGTGAAACTGCGAATGGCTCAATACAACAGTTATAGTTTAT 120 |||| ||| | | || |||||||||||||||||||| || | |||||||||||| | Sbjct 17963367 AGTATGAACTAATTCAGACTGTGAAACTGCGAATGGCTCATTAAATCAGTTATAGTTTGT 17963426 Query 121 TTGATCGTGCGGGGCTACGTGGATAACCGTAGGAATTCTAGAGCTAATACATGCACCA 178 ||||| || ||||| |||||||||||| ||||||||||||||||| |||| || Sbjct 17963427 TTGATGGT-ATCTGCTACTCGGATAACCGTAGTAATTCTAGAGCTAATACGTGCAACA 17963483 Score = 183 bits (202), Expect = 7e-44 Identities = 142/168 (85%), Gaps = 1/168 (1%) Strand=Plus/Plus Query 1417 ATTTGACTCAACACGGGGAACCTTACCAGGTCCGGACATAGGGAGGATTGACAGATTGAG 1476 || ||||||||||| ||| |||||||||||| ||||||| | ||||||||||||||| Sbjct 12512402 ATGTGACTCAACACAAGGACACTTACCAGGTCCAGACATAGTAAAGATTGACAGATTGAG 12512461 Query 1477 AGCTCTTTCTTGATTCTATGGGTGGTGGTGCATGGCCGTTCTTAGTTGGTGGAGTGATTT 1536 ||||||||||||||||||| |||||| |||||||| |||||||||| | |||| |||| Sbjct 12512462 AGCTCTTTCTTGATTCTAT-GGTGGTAGTGCATGGTTGTTCTTAGTTAGCAGAGTCATTT 12512520 Query 1537 GTCTGGTTAATTCCGTTAACGAGCGAGACCTTGACCTGCTAATTAGCC 1584 |||||||||||||| ||| | |||||||| |||| |||| ||||| Sbjct 12512521 GTCTGGTTAATTCCATTACTAATCGAGACCTCAACCTACTAACTAGCC 12512568 Score = 136 bits (150), Expect = 8e-30 Identities = 216/309 (70%), Gaps = 18/309 (6%) Strand=Plus/Minus Query 1084 GTAATGATTAACAGGGATAGTTGGGGGCACCCGTACTCCGTTGTCAGAGGTGAAATTCAT 1143 ||||| ||||||| | || || | | ||| ||| | | || || |||| ||| | Sbjct 12512866 GTAATTATTAACAAGAATGGTCGAGAGCATTTGTATTTCACACCCAAAGATGAAGTTCTT 12512807 Query 1144 GGATTAACGGAAGACGAACAACTGCGAAAGCATCTGCCAAGGATGTTTTCATTGATCAAG 1203 ||| | | |||| || ||| | |||| ||| |||||| || |||||||| ||||| Sbjct 12512806 ATATTTAAGAAAGATGAGCAAGTAAGAAAACATTTGCCAAATATATTTTCATTAGTCAAG 12512747 Query 1204 AACGAAAGTTAGGGGATCGAAGACGATTAGATACCGTCGTAGTCTTAACCATAAACTATG 1263 ||| |||||| |||| ||| ||||||| ||||| ||| |||||| |||||||||| ||| Sbjct 12512746 AACAAAAGTTGGGGGCTCGGAGACGATCAGATATTGTCCTAGTCTCAACCATAAACAATG 12512687 Query 1264 CCAACTGGGGATTGGTAGAAGTACCAAATAAACGACTCTATCAGCACCCTAAGAGAAATC 1323 ||| | || ||| | | ||| |||| || | ||||| Sbjct 12512686 TTAACCGCT--TT-----AAGGATGA----------TCTGCTGCCACCATATCAAAAATC 12512644 Query 1324 AAAGTCTTTAGGTTCTGGGGGGAGTATGGTCGCAAGGCTGAAACTTAAAGGAATTGACGG 1383 ||||||||| |||| ||||| |||||||||| || || ||||||||| ||||||| || Sbjct 12512643 AAAGTCTTT-GGTTTCGGGGGAAGTATGGTCGAAAAGCAAAAACTTAAATGAATTGATGG 12512585 Query 1384 AAGGGCACC 1392 || |||||| Sbjct 12512584 AATGGCACC 12512576 Score = 42.8 bits (46), Expect = 0.14 Identities = 28/30 (93%), Gaps = 1/30 (3%) Strand=Plus/Plus Query 285 ACAACGAAAAGGTTGAGCCACC-AAGGTCG 313 ||||| |||||||||||||||| ||||||| Sbjct 5245438 ACAACCAAAAGGTTGAGCCACCAAAGGTCG 5245467 Score = 37.4 bits (40), Expect = 6.1 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Minus Query 988 TGTTCATGGCAGGCCTTTTGAATTA 1012 ||| |||| |||||||||||||||| Sbjct 737893 TGTGCATGCCAGGCCTTTTGAATTA 737869 >NC_002753.1:172702-174741 on lcl|JrScfU0001| NC_002753.1:172702-174741 on lcl|JrScfU0001 Length=1158772 Score = 985 bits (1092), Expect = 0.0 Identities = 874/1081 (81%), Gaps = 31/1081 (3%) Strand=Plus/Minus Query 968 TTACTGTGAACAAAATAGAGTGTTCATGGCAGGCCTTTTGAATTAGGCTTAG-ATACCAT 1026 ||||| |||| ||| ||||||| ||| ||| |||| | ||| | |||| | Sbjct 67135 TTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCT--------ACGCTCTGTATACATT 67084 Query 1027 AGCATGGAATAATAGAATAGGACTTCCGGTTCTGTTTTGTTGGTTTTTGGAGCCGAGGTA 1086 ||||||| |||| | |||||| || | | | || |||||| || || || ||| Sbjct 67083 AGCATGGGATAACATCATAGGATTTT-GATCTTATTGTGTTGGCCTTCGGGATCGGAGTA 67025 Query 1087 ATGATTAACAGGGATAGTTGGGGGCACCCGTACTCCGTTGTCAGAGGTGAAATTCATGGA 1146 |||||||||| | | ||| |||||| |||| | | | |||||||||||||||| |||| Sbjct 67024 ATGATTAACAAGAACAGTCAGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGA 66965 Query 1147 TTAACGGAAGACGAACAACTGCGAAAGCATCTGCCAAGGATGTTTTCATTGATCAAGAAC 1206 || | | ||||||||||||| ||||||||| |||||| |||||||||||| ||||||||| Sbjct 66964 TTTATGAAAGACGAACAACTACGAAAGCATTTGCCAATGATGTTTTCATTAATCAAGAAC 66905 Query 1207 GAAAGTTAGGGGATCGAAGACGATTAGATACCGTCGTAGTCTTAACCATAAACTATGCCA 1266 ||||||| |||| ||||||||||| |||||||||| |||||| |||||||||| |||||| Sbjct 66904 GAAAGTTGGGGGCTCGAAGACGATCAGATACCGTCCTAGTCTCAACCATAAACGATGCCA 66845 Query 1267 ACTGGGGATTGGTAGAAGTACCAAATAAACGACTCTATCAGCACCCTAAGAGAAATCAAA 1326 || ||||| || || || | | || |||||| | ||||| || ||||||||||| Sbjct 66844 ACGAGGGATCGGCGGATGTTGCT--TTAAGGACTCTGCCGGCACCTTATGAGAAATCAAA 66787 Query 1327 GTCTTTAGGTTCTGGGGGGAGTATGGTCGCAAGGCTGAAACTTAAAGGAATTGACGGAAG 1386 | |||| ||||| ||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 66786 GCCTTTGGGTTCCAGGGGGAGTATGGTCGCAAGGCTGAAACTTAAAGGAATTGACCGAAG 66727 Query 1387 GGCACCACCAGGCGTGGAGCCTGCGGCTTAATTTGACTCAACACGGGGAACCTTACCAGG 1446 |||||||| ||| ||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 66726 GGCACCACTAGGAGTGGAGCCTGCGGCTTAATTTGACTCAACACGGGGAAACTTACCAGG 66667 Query 1447 TCCGGACATAGGGAGGATTGACAGATTGAGAGCTCTTTCTTGATTCTATGGGTGGTGGTG 1506 ||| ||||||| |||||||||| | |||||||||||||||||||||||||||||||||| Sbjct 66666 TCCAGACATAGTAAGGATTGACAAACTGAGAGCTCTTTCTTGATTCTATGGGTGGTGGTG 66607 Query 1507 CATGGCCGTTCTTAGTTGGTGGAGTGATTTGTCTGGTTAATTCCGTTAACGAGCGAGACC 1566 |||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| Sbjct 66606 CATGGCCGTTCTTAGTTGGTGGAGCGATTTGTCTGGTTAATTCCGTTAACGAACGAGACC 66547 Query 1567 TTGACCTGCTAATTAGCCCCGTCGGTGGCAACGCCTTCG-TGATGGCTTCTTAGAGGGAC 1625 | || ||||| |||| | ||| || || | | || | ||||||||||||||| Sbjct 66546 TCAGCCAGCTAACTAGCTATG-CGGAGGTGAC-CTTCCGCGGCCAGCTTCTTAGAGGGAC 66489 Query 1626 GAT--CCGCGTTATTAGTGGATGGAGGAATGAGGCAATAACAGGTCTGTGATGCCCTTAG 1683 || |||| |||| | ||| | ||||||||||||||||||| ||||||||||| Sbjct 66488 TATGGCCGC----TTAGGCCAAGGAAGTTTGAGGCAATAACAGGTCTGGGATGCCCTTAG 66433 Query 1684 ATGTCCTGGGCCGCACGCGCGCTACAATGGTGCAGACAATGAGTGCTGCTCCTGGTCCGA 1743 |||| ||||||||||||||||||||| || || | ||| |||| ||| | |||| Sbjct 66432 ATGTTCTGGGCCGCACGCGCGCTACACTGATGTATTCAACGAGTTTATAGCCTTGGCCGA 66373 Query 1744 AAGGATTGGGGAATCTTGGAAACTGCATCGTGATAGGGATAGATGATTGCAATTTTTCAT 1803 ||| ||| ||||||||||| | ||||||||| ||||||||| ||||||||| || | Sbjct 66372 CAGGCCCGGGTAATCTTGGAAATTTCATCGTGATGGGGATAGATCATTGCAATTGTTGGT 66313 Query 1804 CTTGAACGAGGAATGCCTTGTAAGCGCGAGTCATCAACTCGCGCTGAATACGTCCCTGCC 1863 ||| |||||||||| ||| ||||||||||||||||| ||||| ||| ||| ||||| || Sbjct 66312 CTTCAACGAGGAATTCCTAGTAAGCGCGAGTCATCAGCTCGCTTTGACTACATCCCTACC 66253 Query 1864 CTTTGTACACACCGCCCGTCGCTCCTACCGATTGGATGGCCCGGTGAAATGCTCGGA-CG 1922 ||||||||||||||||||| |||||||||||||| |||| |||||||| || ||||| || Sbjct 66252 CTTTGTACACACCGCCCGTTGCTCCTACCGATTGAATGGTCCGGTGAAGTGTTCGGATCG 66193 Query 1923 A-GTGTTCAGAGCCGCCACGATCGTGGCGCTCTTCCTCG---GAAGTGCAGTGAGCCTTG 1978 | | | | | || | ||| || | | ||| ||||| || ||| |||| Sbjct 66192 AGGCGATGTGGGC-----GGTTCGCTGCCTGCAACGTCGCGAGAAGTCCACTGAACCTTA 66138 Query 1979 TCATCTAGAGGAAGGAGAAGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCA 2038 |||| ||||||||||||||||||||||||||||||| |||||||||||||| |||||||| Sbjct 66137 TCATTTAGAGGAAGGAGAAGTCGTAACAAGGTTTCCATAGGTGAACCTGCGAAAGGATCA 66078 Query 2039 T 2039 | Sbjct 66077 T 66077 Score = 414 bits (458), Expect = 2e-113 Identities = 297/341 (87%), Gaps = 1/341 (0%) Strand=Plus/Minus Query 492 ATCATTCAAATTTCTGCCCTATCAACTTTCGATGGTTGGGTAGTGGCCAACCATGGTGTT 551 ||||||||||||||||||||||||||||||||| || || ||| |||| || |||||| | Sbjct 67588 ATCATTCAAATTTCTGCCCTATCAACTTTCGATTGTAGGATAGAGGCCTACAATGGTGGT 67529 Query 552 GACGGGTA-CGGGGAATTAGGGTTCGATTCCGGAGAGGGAGCCTGAGAGATGGCTACCAC 610 |||||||| ||| |||||||||||| |||| ||||||||||||||||| | ||||||||| Sbjct 67528 GACGGGTAACGGAGAATTAGGGTTCTATTCTGGAGAGGGAGCCTGAGAAACGGCTACCAC 67469 Query 611 ATCCAAGGAAGGCAGCAGGCGCGAAAATTACCCAATCCTGATTCAGGGAGGTAGCGACAA 670 |||||||||||||||||||||| ||||||||||||||||| | ||||||||| ||||| Sbjct 67468 ATCCAAGGAAGGCAGCAGGCGCACAAATTACCCAATCCTGACACGGGGAGGTAGTGACAA 67409 Query 671 GAAATAACGGTAGTGGACTCGTTCGAGTCTGCTCATCGGAATGAGGATAGTTTACACCCC 730 ||||||| || | ||| | |||||||| | || |||||||| | | | || | ||| Sbjct 67408 TAAATAACAATACCAGGCTCTTACGAGTCTGGTAATTGGAATGAGTACAATCTAAATCCC 67349 Query 731 TTCTCGAGGATCCATTGGAGGGCAAGTCTGGTGCCAGCAGCCGCGGTAACTCCAGCTCCA 790 || |||||||||||||||||||||||||||||||||||||||| |||| |||||||||| Sbjct 67348 TTAACGAGGATCCATTGGAGGGCAAGTCTGGTGCCAGCAGCCGCAGTAATTCCAGCTCCA 67289 Query 791 ATAGCGTATACTAAAGTTGCTGCAGTTAAAAAGCTCGTAGT 831 |||||||||| | |||||| ||||||||||||||||||||| Sbjct 67288 ATAGCGTATATTTAAGTTGTTGCAGTTAAAAAGCTCGTAGT 67248 Score = 159 bits (176), Expect = 7e-37 Identities = 143/178 (80%), Gaps = 1/178 (1%) Strand=Plus/Minus Query 1 ACCTGGTTGATCCTGCCAGTAGTCATATGCTTGTCTTAAGGATTAAGCCATGCATGTCTC 60 |||| || |||||||||||||||||||||||||||| || ||||||| ||||||||| | Sbjct 67882 ACCTAGTAGATCCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAGTCATGCATGTGTA 67823 Query 61 AGTACAAACAAGATTGTACCGTGAAACTGCGAATGGCTCAATACAACAGTTATAGTTTAT 120 |||| |||| | | || |||||||||| | ||||||| || | |||||||||||| | Sbjct 67822 AGTATAAACTAATTCAGACTGTGAAACTGCAAGTGGCTCATTAAATCAGTTATAGTTTGT 67763 Query 121 TTGATCGTGCGGGGCTACGTGGATAACCGTAGGAATTCTAGAGCTAATACATGCACCA 178 ||||| ||| |||| |||||| ||| ||||||||||||||||| |||| || Sbjct 67762 TTGATGGTG-TCTACTACTCAAATAACCCTAGTAATTCTAGAGCTAATACGTGCAACA 67706 >NC_002753.1:172702-174741 on lcl|Jr8S| NC_002753.1:172702-174741 on lcl|Jr8S Length=19617005 Score = 829 bits (918), Expect = 0.0 Identities = 913/1196 (76%), Gaps = 67/1196 (6%) Strand=Plus/Minus Query 740 ATCCATTGGAGGGCAAGTCTGGTGCCAGCAGCCGCGGTAACTCCAGCTCCAATAGCGTAT 799 |||||||||| ||||| ||||||||||||||||||||| ||||||||||||||||||| Sbjct 11402007 ATCCATTGGACAACAAGTTTGGTGCCAGCAGCCGCGGTAATTCCAGCTCCAATAGCGTAT 11401948 Query 800 ACTAAAGTTGCTGCAGTTAAAAAGCTCGTAGTCGAATTGGATCATAGAGAGGAGAGTCGC 859 | | |||| || |||||||||||||||||| |||||| | | || || Sbjct 11401947 ATTTAAGTGATTGTAGTTAAAAAGCTCGTAGT-----TGGATCTTGGGTTGGGCAGA--- 11401896 Query 860 GCGCACTCCCTCTGGTTGAGTGGACGCGCGCGCTCTTTCTGTGATCAACCTTTCTGGGAG 919 ||| | || ||||| ||| || || ||| | ||| || || | | Sbjct 11401895 GCGGTCCGCCCCTGGT---GTGCAC-----CGGTCT------GCTCATCCCTTTT---AC 11401853 Query 920 GGTCTCTGAAGAGGATGC-CTC-TGTATTCAGACC---CCTCTTGGATGTATTTTACTGT 974 | | ||||| ||| || | || | |||| |||| | ||||| | Sbjct 11401852 CGGC---------GATGCACTCCTGGCCTTAGGTCGTGCCTCC--GATGC-TGTTACTTT 11401805 Query 975 GAACAAAATAGAGTGTTCATGGCAGGCCTTTTGAATTAGGCTTAG-ATACCATAGCATGG 1033 || ||| ||||||||||| ||| |||| | ||| | |||| |||||||| Sbjct 11401804 AAAGAAATTAGAGTGTTCAAAGCAAGCCT--------ACACTTTGTATACATTAGCATGG 11401753 Query 1034 AATAATAGAATAGGACTTCCGGTTCTGTTTTGTTGGTTTTTGG-AGCCGAGGTAATGATT 1092 |||| | |||||| ||| ||| || || |||||| ||||| | | ||| |||||||| Sbjct 11401752 GATAACATCATAGGATTTC-GGTCCTATTGTGTTGGCCTTTGGGATCAGAG-TAATGATT 11401695 Query 1093 AACAGGGATAGTTGGGGGCACCCGTACTCCGTTGTCAGAGGTGAAATTCATGGATTAACG 1152 || ||| ||||| |||||| |||| | | | |||||||||||||||| |||||| | | Sbjct 11401694 AATAGGAATAGTCAGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTATG 11401635 Query 1153 GAAGACGAACAACTGCGAAAGCATCTGCCAAGGATGTTTTCATTGATCAAGAACGAAAGT 1212 ||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| Sbjct 11401634 AAAGACGAACAACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCAAGAACGAAAGT 11401575 Query 1213 TAGGGGATCGAAGACGATTAGATACCGTCGTAGTCTTAACCATAAACTATGCCAACTGGG 1272 |||||| ||||||||||| |||||| ||| |||||| |||||||||| |||| || || Sbjct 11401574 TAGGGGCTCGAAGACGATAAGATACTGTCCTAGTCTCAACCATAAACGATGCTGACCAGG 11401515 Query 1273 GATTGGTAGAAGTACCAAATAAACGACTCTATCAGCACCCTAAGAGAAATCAAAGTCTTT 1332 |||||| | || | | || ||||| | |||| || |||||||||||| ||| Sbjct 11401514 GATTGGCGGTTGTTGCT--TTAAGGACTCCGCCGACACCTTATGAGAAATCAAAGATTTT 11401457 Query 1333 AGGTTCTGGGGGGAGTATGGTCGCAAGGCTGAAACTTAAAGGAATTGACGGAAGGGCACC 1392 |||| | |||||||| ||||||||||||||||||||||||||||||| ||||||||||| Sbjct 11401456 GGGTT-TCGGGGGAGTTTGGTCGCAAGGCTGAAACTTAAAGGAATTGATGGAAGGGCACC 11401398 Query 1393 ACCAGGCGTGGAGCCTGCGGCTTAATTTGACTCAACACGGGGAACCTTACCAGGTCCGGA 1452 || ||| ||||| ||| |||||||||||||||||||| ||| || ||||| ||||| | Sbjct 11401397 ACTAGGAGTGGAACCTACGGCTTAATTTGACTCAACATGGGAAAACTTACTGGGTCCAAA 11401338 Query 1453 CATAGGGAGGATTGACAGATTGAGAGCTCTTTCTTGATTCTATGGGTGGTGGTGCATGGC 1512 ||||| |||||||||||| ||||||||||||||||||||||| ||||||| |||||| | Sbjct 11401337 CATAGTAAGGATTGACAGAATGAGAGCTCTTTCTTGATTCTATAGGTGGTGATGCATGAC 11401278 Query 1513 CGTTCTTAGTTGGTGGAGTGATTTGTCTGGTTAATTCCGTTAACGAGCGAGACCTTGACC 1572 |||||||||||||||||| ||||||||||||||||| |||||| | |||||||| | Sbjct 11401277 CGTTCTTAGTTGGTGGAGCGATTTGTCTGGTTAATTATGTTAACAAACGAGACCTCAGCT 11401218 Query 1573 TGCTAATTAGCCCCGTCGGTGGCAACGCCTTCG-TGATGGCTTCTTAGAGGGACGAT--C 1629 ||| || |||| | || || || | | || | ||||||||||||||| || | Sbjct 11401217 TGCCAACTAGCTATG-AGGAGGTGAC-CTTCCGCGGCCAGCTTCTTAGAGGGACTATGGC 11401160 Query 1630 CGCGTTATTAGTGGATGGAGGAATGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTCC 1689 ||| |||| | ||| | ||||||||||||| ||||||||||||||||||||| | Sbjct 11401159 CGC----TTAGGCCAAGGAAGTTTGAGGCAATAACATGTCTGTGATGCCCTTAGATGTTC 11401104 Query 1690 TGGGCCGCACGCGCGCTACAATGGTGCAGACAATGAGTGCTGCTCCTGGTCCGAAAGGAT 1749 ||||||||||| ||| |||| || | | ||| |||| ||| | |||| ||| Sbjct 11401103 TGGGCCGCACGTGCGTTACACTGATATACTCAACGAGTTTATAGCCTTGGCCGACAGGCC 11401044 Query 1750 TGGGGAATCTTGGAAACTGCATCGTGATAGGGATAGATGATTGCAATTTTTCATCTTGAA 1809 || ||| || |||| | |||| |||| | ||||||| ||||||||| || |||| || Sbjct 11401043 CTGGTAATATTTGAAATTTCATCATGATGGAGATAGATCATTGCAATTGTTGGTCTTCAA 11400984 Query 1810 CGAGGAATGCCTTGTAAGCGCGAGTCATCAACTCGCGCTGAATACGTCCCTGCCCTTTGT 1869 ||||||| ||| ||||| ||||||||||| |||||| ||| |||||||||||||||||| Sbjct 11400983 TGAGGAATTCCTAGTAAGTGCGAGTCATCAGCTCGCGTTGACTACGTCCCTGCCCTTTGT 11400924 Query 1870 ACACACCGCCCGTCGCTCCTACCGATTGGATGGCCCGGTGAAATGCTCGGA-CGAG 1924 ||||| ||||||||| |||||| ||||| |||| ||| |||| || | ||| |||| Sbjct 11400923 ACACATCGCCCGTCGGTCCTACTGATTGAATGGTCCGATGAAGTGTTTGGATCGAG 11400868 Score = 266 bits (294), Expect = 7e-69 Identities = 220/267 (82%), Gaps = 1/267 (0%) Strand=Plus/Minus Query 481 GCCGGCGGTAAATCATTCAAATTTCTGCCCTATCAACTTTCGATGGTTGGGTAGTGGCCA 540 |||| || | |||||||||||||||||| ||||||||||| || || || ||| |||| Sbjct 11405840 GCCGACGATGCATCATTCAAATTTCTGCCTTATCAACTTTCAATTGTAGGATAGAGGCCT 11405781 Query 541 ACCATGGTGTTGACGGGTA-CGGGGAATTAGGGTTCGATTCCGGAGAGGGAGCCTGAGAG 599 || |||||| ||||||||| | | ||||||||||||||||| ||||||||||||||||| Sbjct 11405780 ACAATGGTGGTGACGGGTAACAGAGAATTAGGGTTCGATTCTGGAGAGGGAGCCTGAGAA 11405721 Query 600 ATGGCTACCACATCCAAGGAAGGCAGCAGGCGCGAAAATTACCCAATCCTGATTCAGGGA 659 | |||||||||||||||||||| ||| |||||| ||||||||||||||||| | |||| Sbjct 11405720 ACAGCTACCACATCCAAGGAAGGTAGCGGGCGCGCAAATTACCCAATCCTGACACGGGGA 11405661 Query 660 GGTAGCGACAAGAAATAACGGTAGTGGACTCGTTCGAGTCTGCTCATCGGAATGAGGATA 719 ||||| ||||| ||||||| || ||| ||| | |||||||| | || |||||||| | | Sbjct 11405660 GGTAGTGACAATAAATAACAATATTGGGCTCTTACGAGTCTGGTTATTGGAATGAGTACA 11405601 Query 720 GTTTACACCCCTTCTCGAGGATCCATT 746 | || | |||| ||||||||||| Sbjct 11405600 ATCTAAATTCCTTAATGAGGATCCATT 11405574 Score = 262 bits (290), Expect = 8e-68 Identities = 242/305 (79%), Gaps = 6/305 (2%) Strand=Plus/Plus Query 1612 CTTCTTAGAGGGACGAT--CCGCGTTATTAGTGGATGGAGGAATGAGGCAATAACAGGTC 1669 |||||||||| ||| || |||| |||| | || | ||||||||||||| || Sbjct 16484001 CTTCTTAGAGAGACTATGGCCGC----TTAGGCCAAAGAAGTTTGAGGCAATAACAAATC 16484056 Query 1670 TGTGATGCCCTTAGATGTCCTGGGCCGCACGCGCGCTACAATGGTGCAGACAATGAGTGC 1729 |||||||||||||||||| |||||||||||| |||||||| || || | ||| |||| Sbjct 16484057 TGTGATGCCCTTAGATGTTCTGGGCCGCACGTGCGCTACACTGATGTATTCAACGAGTTT 16484116 Query 1730 TGCTCCTGGTCCGAAAGGATTGGGGAATCTTGGAAACTGCATCGTGATAGGGATAGATGA 1789 ||| | |||| | | |||| |||||| |||| | |||| ||| ||||||||| | Sbjct 16484117 ATAGCCTTGGCCGACATGCCTGGGTAATCTTTGAAATTTCATCATGACGGGGATAGATCA 16484176 Query 1790 TTGCAATTTTTCATCTTGAACGAGGAATGCCTTGTAAGCGCGAGTCATCAACTCGCGCTG 1849 |||||||| || |||| |||||||||| ||| ||||| |||||||| | |||||| || Sbjct 16484177 TTGCAATTGTTGGTCTTCAACGAGGAATTCCTAATAAGCACGAGTCATTAGCTCGCGTTG 16484236 Query 1850 AATACGTCCCTGCCCTTTGTACACACCGCCCGTCGCTCCTACCGATTGGATGGCCCGGTG 1909 | ||||||| |||||||| ||||||||||||||||||||||||||||| |||| |||||| Sbjct 16484237 ACTACGTCCTTGCCCTTTATACACACCGCCCGTCGCTCCTACCGATTGAATGGTCCGGTG 16484296 Query 1910 AAATG 1914 || || Sbjct 16484297 AAGTG 16484301 Score = 147 bits (162), Expect = 5e-33 Identities = 140/178 (79%), Gaps = 1/178 (1%) Strand=Plus/Minus Query 1 ACCTGGTTGATCCTGCCAGTAGTCATATGCTTGTCTTAAGGATTAAGCCATGCATGTCTC 60 |||||||||||||||||||||||||||||||||||| || |||||||||||| |||| | Sbjct 11406124 ACCTGGTTGATCCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAGCCATGTATGTGTA 11406065 Query 61 AGTACAAACAAGATTGTACCGTGAAACTGCGAATGGCTCAATACAACAGTTATAGTTTAT 120 |||| || | | || | ||||||||||||| |||| || | ||| | ||||| | Sbjct 11406064 AGTATGAAATAATTCAGACTGCGAAACTGCGAATGACTCATTAAATTAGTAAAAGTTTGT 11406005 Query 121 TTGATCGTGCGGGGCTACGTGGATAACCGTAGGAATTCTAGAGCTAATACATGCACCA 178 ||||| || | || ||||||||||| ||||||||||||||||| |||| || Sbjct 11406004 TTGATGGT-ATCTGTTAGTCTGATAACCGTAGTAATTCTAGAGCTAATACGTGCAACA 11405948 Score = 102 bits (112), Expect = 2e-19 Identities = 70/79 (89%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 1961 GAAGTGCAGTGAGCCTTGTCATCTAGAGGAAGGAGAAGTCGTAACAAGGTTTCCGTAGGT 2020 ||||| || ||| |||| |||| ||||||||||| ||||||||||||||||| ||||||| Sbjct 11398290 GAAGTCCACTGAACCTTATCATTTAGAGGAAGGATAAGTCGTAACAAGGTTTTCGTAGGT 11398231 Query 2021 GAACCTGCGGAAGGATCAT 2039 |||||| ||||||||||| Sbjct 11398230 AAACCTGTGGAAGGATCAT 11398212 >NC_002753.1:172702-174741 on lcl|Jr6D| NC_002753.1:172702-174741 on lcl|Jr6D Length=37991167 Score = 437 bits (484), Expect = 2e-120 Identities = 309/352 (88%), Gaps = 1/352 (0%) Strand=Plus/Plus Query 481 GCCGGCGGTAAATCATTCAAATTTCTGCCCTATCAACTTTCGATGGTTGGGTAGTGGCCA 540 ||||||| ||||||||||||||||||||||||||||||||| || || ||| |||| Sbjct 2788469 GCCGGCGACGCATCATTCAAATTTCTGCCCTATCAACTTTCGATTGTAGGATAGAGGCCT 2788528 Query 541 ACCATGGTGTTGACGGGTA-CGGGGAATTAGGGTTCGATTCCGGAGAGGGAGCCTGAGAG 599 || |||||| ||||||||| ||| ||||||||||||||||||||||||||||||||||| Sbjct 2788529 ACAATGGTGGTGACGGGTAACGGAGAATTAGGGTTCGATTCCGGAGAGGGAGCCTGAGAA 2788588 Query 600 ATGGCTACCACATCCAAGGAAGGCAGCAGGCGCGAAAATTACCCAATCCTGATTCAGGGA 659 | |||||||||||||||||||||||||||||||| ||||||||||||||||| | |||| Sbjct 2788589 ACGGCTACCACATCCAAGGAAGGCAGCAGGCGCGCAAATTACCCAATCCTGACACGGGGA 2788648 Query 660 GGTAGCGACAAGAAATAACGGTAGTGGACTCGTTCGAGTCTGCTCATCGGAATGAGGATA 719 ||||| ||||| ||||||| || || ||| | |||||||| | || |||||||| | | Sbjct 2788649 GGTAGTGACAATAAATAACAATACCGGGCTCTTACGAGTCTGGTAATTGGAATGAGTACA 2788708 Query 720 GTTTACACCCCTTCTCGAGGATCCATTGGAGGGCAAGTCTGGTGCCAGCAGCCGCGGTAA 779 | || | ||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2788709 ATCTAAATCCCTTAACGAGGATCCATTGGAGGGCAAGTCTGGTGCCAGCAGCCGCGGTAA 2788768 Query 780 CTCCAGCTCCAATAGCGTATACTAAAGTTGCTGCAGTTAAAAAGCTCGTAGT 831 |||||||||||||||||||| | |||||| ||||||||||||||||||||| Sbjct 2788769 TTCCAGCTCCAATAGCGTATATTTAAGTTGTTGCAGTTAAAAAGCTCGTAGT 2788820 Score = 192 bits (212), Expect = 1e-46 Identities = 150/178 (84%), Gaps = 1/178 (1%) Strand=Plus/Plus Query 1 ACCTGGTTGATCCTGCCAGTAGTCATATGCTTGTCTTAAGGATTAAGCCATGCATGTCTC 60 |||||||||||||||||||||||||||||||||||| || ||||||||||||||||| | Sbjct 2788186 ACCTGGTTGATCCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAGCCATGCATGTGTA 2788245 Query 61 AGTACAAACAAGATTGTACCGTGAAACTGCGAATGGCTCAATACAACAGTTATAGTTTAT 120 |||| ||| | | || |||||||||||||||||||| || | |||||||||||| | Sbjct 2788246 AGTATGAACTAATTCAGACTGTGAAACTGCGAATGGCTCATTAAATCAGTTATAGTTTGT 2788305 Query 121 TTGATCGTGCGGGGCTACGTGGATAACCGTAGGAATTCTAGAGCTAATACATGCACCA 178 ||||| || ||||| |||||||||||| ||||||||||||||||| |||| || Sbjct 2788306 TTGATGGT-ATCTGCTACTCGGATAACCGTAGTAATTCTAGAGCTAATACGTGCAACA 2788362 Score = 156 bits (172), Expect = 9e-36 Identities = 167/219 (76%), Gaps = 10/219 (5%) Strand=Plus/Plus Query 968 TTACTGTGAACAAAATAGAGTGTTCATGGCAGGCCTTTTGAATTAGGCTTAG-ATACCAT 1026 ||||| |||| ||| ||||||| ||| ||| |||| | ||| | |||| | Sbjct 2788933 TTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCT--------ACGCTCTGTATACATT 2788984 Query 1027 AGCATGGAATAATAGAATAGGACTTCCGGTTCTGTTTTGTTGGTTTTTGGAGCCGAGGTA 1086 ||||||| |||| | |||||| ||| ||| || || |||||| || || || ||| Sbjct 2788985 AGCATGGGATAACATCATAGGATTTC-GGTCCTATTGTGTTGGCCTTCGGGATCGGAGTA 2789043 Query 1087 ATGATTAACAGGGATAGTTGGGGGCACCCGTACTCCGTTGTCAGAGGTGAAATTCATGGA 1146 |||||||||||| | ||| ||||||| |||| | | | |||||||||||||||| |||| Sbjct 2789044 ATGATTAACAGGAACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGA 2789103 Query 1147 TTAACGGAAGACGAACAACTGCGAAAGCATCTGCCAAGG 1185 || | | ||||||||||||||||||||||| |||||||| Sbjct 2789104 TTTATGAAAGACGAACAACTGCGAAAGCATTTGCCAAGG 2789142 Score = 37.4 bits (40), Expect = 6.1 Identities = 28/32 (88%), Gaps = 1/32 (3%) Strand=Plus/Minus Query 614 CAAGGAAGGCAGCAGGCGCGAAAATT-ACCCA 644 |||| |||||||||||| | |||||| ||||| Sbjct 505682 CAAGAAAGGCAGCAGGCACAAAAATTCACCCA 505651 Score = 37.4 bits (40), Expect = 6.1 Identities = 20/20 (100%), Gaps = 0/20 (0%) Strand=Plus/Plus Query 423 AATCATAATAACtttttttt 442 |||||||||||||||||||| Sbjct 33489547 AATCATAATAACTTTTTTTT 33489566 >NC_002753.1:172702-174741 on lcl|Jr2D| NC_002753.1:172702-174741 on lcl|Jr2D Length=43955564 Score = 363 bits (402), Expect = 3e-98 Identities = 539/759 (71%), Gaps = 74/759 (10%) Strand=Plus/Minus Query 1289 AAATAAACGACTCTATCAGCACCCTAAGAGAAATCAAAGTCTTTAGGTTCTGGGGGGAGT 1348 ||| ||| ||||| | ||| | || ||||||||||||||||| ||||| |||| ||| Sbjct 21876303 AAAAAAAGGACTCCACTGGCATCTTATGAGAAATCAAAGTCTTTGCGTTCTAGGGG-AGT 21876245 Query 1349 ATGGTCGCAAGGCTGAAACTTAAAGGAATTGACGGAAGGGCACCACCAGGCGTGGAGCCT 1408 |||||||||||||||||| ||||| ||||| || ||||||||||||| | |||||||| Sbjct 21876244 ATGGTCGCAAGGCTGAAATTTAAATGAATTAACATAAGGGCACCACCAAGAATGGAGCCT 21876185 Query 1409 GCGGCTTAATTTGACTCAACACGGGGAACCTTACCAGGTCCGGACATAGGGAGGATTGAC 1468 |||||||||||||||||||||| || || ||| | | ||| ||||||| || |||||| Sbjct 21876184 GCGGCTTAATTTGACTCAACACTGGAAAACTTGCTAAGTCTAGACATAGTAAGAATTGAC 21876125 Query 1469 AGATTGAGAGCTCTTTCTTGATTCTATGGGTGGTGGTGCATGGCCGTTCTTAGTTGGTGG 1528 | | | |||| |||| Sbjct 21876124 AAACTAAGAGTTCTT--------------------------------------------- 21876110 Query 1529 AGTGATTTGTCTGGTTAATTCCGTTAACGAGCGAGACCTTGACCTGCTAATTAGCCCCGT 1588 ||| ||||||||| | ||||||| ||| ||||| ||| |||| |||| | Sbjct 21876109 -----TTT---TGGTTAATTTCATTAACGAACGAAACCTTAGCCTACTAACTAGCTATG- 21876059 Query 1589 CGGTGGCAACGCCTTC-GTGATGG-CTTCTTAGAGGGACGATCCGCGTTA-TTAGTGGAT 1645 | | || || |||| | || |||||||||||||| || || | |||| | | Sbjct 21876058 CAGAGGTGAC--CTTCTGCGACCAACTTCTTAGAGGGACTATG---GTCACTTAG-GCAA 21876005 Query 1646 GGAGGAATGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTCCTGGGCCGCACGCGCGC 1705 ||| | ||||| |||||||| | ||||||||| |||||||| ||||||| || | || Sbjct 21876004 GGAAGTTTGAGGTAATAACAGATATGTGATGCCTTTAGATGTTCTGGGCCACATA-GTGC 21875946 Query 1706 TACAATGGTGCAGACAATGAGTGCTGCTCCTGGTCCGAAAGGATTGGGGAATCTTGGAAA 1765 |||| || || | ||| |||| ||| | |||| | | ||| |||||| |||| Sbjct 21875945 TACATTGATGTATTCAACGAGTTTATAGCCTTGGCCGACAAGCCCGGGTAATCTTTGAAA 21875886 Query 1766 CTGCATCGTGATAGGGATAGATGATTGCAATTTTTCATCTTGAACGAGGAATGCCTTGTA 1825 | ||||||||||||||||||| ||||||||| || |||| ||| |||||| ||| ||| Sbjct 21875885 TTTCATCGTGATAGGGATAGATCATTGCAATTGTTGGTCTTCAACAAGGAATTCCTAGTA 21875826 Query 1826 AGCGCGAGTCATCAACTCGCGCTGAATACGTCCCTGCCCTTTGTACACACCGCCCGTCGC 1885 |||| |||||||||||||| | ||| || ||||||||||||||||||||| || | | || Sbjct 21875825 AGCGTGAGTCATCAACTCGTGTTGATTATGTCCCTGCCCTTTGTACACACTGCTCATTGC 21875766 Query 1886 TCCTACCGATTGGATGGCCCGGTGAAATGCTCGGACGAGTGTTCAGAGCCGCCACGATCG 1945 |||||||||||| ||| || |||| || ||||| ||| | | | | | ||| Sbjct 21875765 TCCTACCGATTGATTGGTCCAATGAAGTGTTCGGA-TCGTGCTGACATGAGTGA--TTCG 21875709 Query 1946 -TGGCGCT--CTTCCTCG-GAAGTGCAGTGAGCCTTGTCATCTAGAGGAAGGAGAAGTCG 2001 || || | | | |||| ||||| || ||| | || |||| |||| ||||||||||||| Sbjct 21875708 CTGCCGGTGACAT-CTCGAGAAGTCCACTGAACATTATCATTTAGATGAAGGAGAAGTCG 21875650 Query 2002 TAACA-AGGTTTCCGTAGGTGAACCTGCGGAAGGATCAT 2039 ||||| | || || | |||||||| || |||| |||||| Sbjct 21875649 TAACACATGTCTCAGCAGGTGAACATGGGGAACGATCAT 21875611 Score = 152 bits (168), Expect = 1e-34 Identities = 198/270 (73%), Gaps = 3/270 (1%) Strand=Plus/Minus Query 1017 TAGATACCATAGCATGGAATAATAGAATAGGACTTCCGGTTCTGTTTTGTTGGTTTTTG- 1075 || |||| ||| ||| |||||| |||||| ||| ||| | || |||||| || | Sbjct 21880257 TATATACATTAGTATGTGATAATATCATAGGATTTC-GGTCCAATTGTGTTGGCCTTCGA 21880199 Query 1076 GAGCCGAGGTAATGATTAACAGGGATAGTTGGGGGCACCCGTACTCCGTTGTCAGAGGTG 1135 || | || |||| ||||||||| | || || |||| || | | | | |||||||||| Sbjct 21880198 GATCGGAA-TAATCATTAACAGGAACGGTCGGAGGCATTCGCATTTCATAGTCAGAGGTG 21880140 Query 1136 AAATTCATGGATTAACGGAAGACGAACAACTGCGAAAGCATCTGCCAAGGATGTTTTCAT 1195 |||||| | |||| | | ||||||||||||| | |||||| |||||||||| || | || Sbjct 21880139 AAATTCTTAGATTTATGAAAGACGAACAACTACATAAGCATTTGCCAAGGATATTGTTAT 21880080 Query 1196 TGATCAAGAACGAAAGTTAGGGGATCGAAGACGATTAGATACCGTCGTAGTCTTAACCAT 1255 | ||||| ||| |||||| || | || ||| | || | || | || ||||||||||||| Sbjct 21880079 TAATCAAAAACAAAAGTTGGGAGCTCAAAGGCAATCAAATTTCATCCTAGTCTTAACCAT 21880020 Query 1256 AAACTATGCCAACTGGGGATTGGTAGAAGT 1285 ||| ||| | || |||| ||||| || Sbjct 21880019 AAATGATGTCGACCAAGGATCAGTAGATGT 21879990 Score = 140 bits (154), Expect = 7e-31 Identities = 178/245 (73%), Gaps = 0/245 (0%) Strand=Plus/Plus Query 1676 GCCCTTAGATGTCCTGGGCCGCACGCGCGCTACAATGGTGCAGACAATGAGTGCTGCTCC 1735 |||||||||||| |||| | ||| |||||| | || || | |||||||| || Sbjct 17279633 GCCCTTAGATGTTCTGGTTCACACATGCGCTATACTGATGTATTCAATGAGTTTATAGCC 17279692 Query 1736 TGGTCCGAAAGGATTGGGGAATCTTGGAAACTGCATCGTGATAGGGATAGATGATTGCAA 1795 | | || | ||| |||| |||||| |||| | |||| |||| |||||| || || | | Sbjct 17279693 TTGGCCAACAGGTCTGGGTAATCTTTGAAATTTCATCATGATGGGGATAAATCATGGTCA 17279752 Query 1796 TTTTTCATCTTGAACGAGGAATGCCTTGTAAGCGCGAGTCATCAACTCGCGCTGAATACG 1855 || || |||| || ||||||| || |||||| |||||||||||| | | ||| || | Sbjct 17279753 TTGTTGGTCTTTAATGAGGAATTTCTAGTAAGCAAGAGTCATCAACTTGTGTTGATTATG 17279812 Query 1856 TCCCTGCCCTTTGTACACACCGCCCGTCGCTCCTACCGATTGGATGGCCCGGTGAAATGC 1915 ||||||| | | |||||| || || || |||| ||| |||| |||| | ||||| | Sbjct 17279813 CCCCTGCCTTCTATACACATCGACCATCACTCCAACCAATTGAATGGTCTAGTGAAGTAT 17279872 Query 1916 TCGGA 1920 ||||| Sbjct 17279873 TCGGA 17279877 Score = 95.1 bits (104), Expect = 3e-17 Identities = 74/87 (85%), Gaps = 1/87 (1%) Strand=Plus/Minus Query 740 ATCCATTGGAGGGCAAGTCTGGTGCCAGCAGCCGCGGTAACTCCAGCTCCAATAGCGTAT 799 ||||||||||||| |||||| | |||||||||| ||||| || ||||||||||| ||| Sbjct 21880499 ATCCATTGGAGGGTAAGTCTC-TCCCAGCAGCCGTGGTAATTCTAGCTCCAATAGTATAT 21880441 Query 800 ACTAAAGTTGCTGCAGTTAAAAAGCTC 826 | | |||||| ||||||||||||| || Sbjct 21880440 ATTTAAGTTGTTGCAGTTAAAAAGTTC 21880414 Score = 51.8 bits (56), Expect = 3e-04 Identities = 33/36 (92%), Gaps = 0/36 (0%) Strand=Plus/Minus Query 1505 TGCATGGCCGTTCTTAGTTGGTGGAGTGATTTGTCT 1540 || ||||||||||||||||||||||| |||||| || Sbjct 43592332 TGTATGGCCGTTCTTAGTTGGTGGAGCGATTTGCCT 43592297 >NC_002753.1:172702-174741 on lcl|Jr3D| NC_002753.1:172702-174741 on lcl|Jr3D Length=38540051 Score = 235 bits (260), Expect = 1e-59 Identities = 180/212 (85%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 481 GCCGGCGGTAAATCATTCAAATTTCTGCCCTATCAACTTTCGATGGTTGGGTAGTGGCCA 540 ||||||| ||||||||| ||||||||||||||||||||||| || || ||| |||| Sbjct 10103348 GCCGGCGACGCATCATTCAAGTTTCTGCCCTATCAACTTTCGATTGTAGGATAGAGGCCT 10103407 Query 541 ACCATGGTGTTGACGGGTACGGGGAATTAGGGTTCGATTCCGGAGAGGGAGCCTGAGAGA 600 || |||||| | | |||| ||||||||||||||||||||||||||||||||||| | Sbjct 10103408 ACAATGGTGGCAA--GTAACGGAGAATTAGGGTTCGATTCCGGAGAGGGAGCCTGAGAAA 10103465 Query 601 TGGCTACCACATCCAAGGAAGGCAGCAGGCGCGAAAATTACCCAATCCTGATTCAGGGAG 660 |||||||||||||||||||||||||||||| | ||||||||||||||||| | ||||| Sbjct 10103466 CGGCTACCACATCCAAGGAAGGCAGCAGGCGTGCAAATTACCCAATCCTGACACGGGGAG 10103525 Query 661 GTAGCGACAAGAAATAACGGTAGTGGACTCGT 692 |||| ||||| ||||||| || |||||||| Sbjct 10103526 GTAGTGACAATAAATAACAATACCGGACTCGT 10103557 Score = 37.4 bits (40), Expect = 6.1 Identities = 20/20 (100%), Gaps = 0/20 (0%) Strand=Plus/Plus Query 418 GGATGAATCATAATAACttt 437 |||||||||||||||||||| Sbjct 17490703 GGATGAATCATAATAACTTT 17490722 >NC_002753.1:172702-174741 on lcl|Jr5D| NC_002753.1:172702-174741 on lcl|Jr5D Length=33932481 Score = 89.7 bits (98), Expect = 1e-15 Identities = 110/148 (74%), Gaps = 2/148 (1%) Strand=Plus/Plus Query 31 TTGTCTTAAGGATTAAGCCATGCATGTCTCAGTACAAACAAGATTGTACCGTGAAACTGC 90 |||||| || ||||||| ||||||||| | |||| ||| | | || || || || Sbjct 13536515 TTGTCTCAAAGATTAAGTCATGCATGTGTAAGTATGAACTAATTCAGACTGTAAAGCTAA 13536574 Query 91 GAATGGCTCAATACAACAGTTATAGTTTATTTGATCGTGCGGGGCTACGTGGATAACCGT 150 ||||| |||| || | |||||||||||| |||||| || || || ||||||| ||| Sbjct 13536575 GAATGACTCATTA-ATCAGTTATAGTTTGTTTGATGGT-ATCTGCAACTTGGATAATCGT 13536632 Query 151 AGGAATTCTAGAGCTAATACATGCACCA 178 || ||| ||||| ||||| ||||| || Sbjct 13536633 AGTAATGATAGAGTTAATATATGCAACA 13536660 Score = 42.8 bits (46), Expect = 0.14 Identities = 57/79 (72%), Gaps = 8/79 (10%) Strand=Plus/Minus Query 1493 TATGGGTGGTGG----TGCATGGCCGTTCTTAGTTGGTGGAGTGATTTGTCTGGTTAATT 1548 |||||||||||| ||||||||| ||| |||||||| ||||| | | || || | Sbjct 30744689 TATGGGTGGTGGTGCATGCATGGCCATTC----TTGGTGGATGGATTTATATTGTAAAAT 30744634 Query 1549 CCGTTAACGAGCGAGACCT 1567 |||||| | | ||||| Sbjct 30744633 TGGTTAACAAACAGGACCT 30744615 Score = 39.2 bits (42), Expect = 1.8 Identities = 28/31 (90%), Gaps = 1/31 (3%) Strand=Plus/Minus Query 435 ttttttttttttttttttC-CGAACCGTATG 464 ||||||| ||||| ||||| ||||||||||| Sbjct 4820856 TTTTTTTATTTTTATTTTCACGAACCGTATG 4820826 >NC_002753.1:172702-174741 on lcl|Jr4D| NC_002753.1:172702-174741 on lcl|Jr4D Length=35878018 Score = 66.2 bits (72), Expect = 1e-08 Identities = 107/153 (70%), Gaps = 1/153 (1%) Strand=Plus/Minus Query 17 CAGTAGTCATATGCTTGTCTTAAGGATTAAGCCATGCATGTCTCAGTACAAACAAGATTG 76 |||| ||||||| ||||||| || |||||||||| || | | | || |||| | | Sbjct 31749308 CAGTGGTCATATACTTGTCTCAAAGATTAAGCCACAAATATGTAAATATAAACTAATTCA 31749249 Query 77 TACCGTGAAACTGCGAATGGCTCAATACAACAGTTATAGTTTATTTGATCGTGCGGGGCT 136 || ||| || |||||| |||||| | | | | | ||| || |||||| | || Sbjct 31749248 AACTGTGTAATTGCGAAGGGCTCATCAAATCGGCTGTAGCTTGTTTGATAGAATCTA-CT 31749190 Query 137 ACGTGGATAACCGTAGGAATTCTAGAGCTAATA 169 || ||||||| | | | |||||||||||||| Sbjct 31749189 ACTCAGATAACCATGGTACTTCTAGAGCTAATA 31749157 Score = 57.2 bits (62), Expect = 7e-06 Identities = 42/49 (86%), Gaps = 0/49 (0%) Strand=Plus/Plus Query 1819 CCTTGTAAGCGCGAGTCATCAACTCGCGCTGAATACGTCCCTGCCCTTT 1867 ||| ||||| ||||||||||| || ||| ||| ||| |||||||||||| Sbjct 26333434 CCTAGTAAGTGCGAGTCATCAGCTTGCGTTGACTACATCCCTGCCCTTT 26333482 Score = 42.8 bits (46), Expect = 0.14 Identities = 23/23 (100%), Gaps = 0/23 (0%) Strand=Plus/Minus Query 1492 CTATGGGTGGTGGTGCATGGCCG 1514 ||||||||||||||||||||||| Sbjct 23503017 CTATGGGTGGTGGTGCATGGCCG 23502995 Score = 37.4 bits (40), Expect = 6.1 Identities = 26/30 (87%), Gaps = 0/30 (0%) Strand=Plus/Plus Query 1051 TCCGGTTCTGTTTTGTTGGTTTTTGGAGCC 1080 || |||||| ||| ||| |||||||||||| Sbjct 25686245 TCTGGTTCTCTTTGGTTTGTTTTTGGAGCC 25686274 >NC_002753.1:172702-174741 on lcl|Jr6S| NC_002753.1:172702-174741 on lcl|Jr6S Length=24894769 Score = 50.0 bits (54), Expect = 0.001 Identities = 38/45 (84%), Gaps = 0/45 (0%) Strand=Plus/Plus Query 1992 GGAGAAGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGAT 2036 || |||||||||||||||| ||||||| ||||||| || |||| Sbjct 11423247 GGTGAAGTCGTAACAAGGTAGCCGTAGGGGAACCTGTGGCCGGAT 11423291 Score = 37.4 bits (40), Expect = 6.1 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Minus Query 811 TGCAGTTAAAAAGCTCGTAGTCGAA 835 ||| |||| |||||||||||||||| Sbjct 1555721 TGCGGTTATAAAGCTCGTAGTCGAA 1555697 Score = 37.4 bits (40), Expect = 6.1 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Plus Query 811 TGCAGTTAAAAAGCTCGTAGTCGAA 835 ||| |||| |||||||||||||||| Sbjct 2990805 TGCGGTTATAAAGCTCGTAGTCGAA 2990829 Score = 37.4 bits (40), Expect = 6.1 Identities = 27/30 (90%), Gaps = 1/30 (3%) Strand=Plus/Plus Query 285 ACAACGAAAAGGTTGAGCCACC-AAGGTCG 313 ||||| |||||| ||||||||| ||||||| Sbjct 7878712 ACAACCAAAAGGCTGAGCCACCAAAGGTCG 7878741 >NC_002753.1:172702-174741 on lcl|Jr1D| NC_002753.1:172702-174741 on lcl|Jr1D Length=51893103 Score = 50.0 bits (54), Expect = 0.001 Identities = 42/52 (81%), Gaps = 0/52 (0%) Strand=Plus/Minus Query 1208 AAAGTTAGGGGATCGAAGACGATTAGATACCGTCGTAGTCTTAACCATAAAC 1259 ||||||| |||| |||| ||||||||||| | |||| | ||||| ||||| Sbjct 35476284 AAAGTTAAGGGAGCGAATGTGATTAGATACCTTAGTAGCCCTAACCTTAAAC 35476233 Score = 39.2 bits (42), Expect = 1.8 Identities = 26/29 (90%), Gaps = 0/29 (0%) Strand=Plus/Minus Query 1933 GCCGCCACGATCGTGGCGCTCTTCCTCGG 1961 |||| |||| || |||||||||||||||| Sbjct 8896920 GCCGACACGGTCATGGCGCTCTTCCTCGG 8896892 Score = 39.2 bits (42), Expect = 1.8 Identities = 30/36 (83%), Gaps = 0/36 (0%) Strand=Plus/Plus Query 1848 TGAATACGTCCCTGCCCTTTGTACACACCGCCCGTC 1883 ||||| ||| |||| | ||||||||||||||| || Sbjct 11032281 TGAATTCGTTCCTGGGCCTTGTACACACCGCCCATC 11032316 Score = 39.2 bits (42), Expect = 1.8 Identities = 44/59 (75%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 1205 ACGAAAGTTAGGGGATCGAAGACGATTAGATACCGTCGTAGTCTTAACCATAAACTATG 1263 ||||||| ||||| | | || ||||||||||| |||||| || | ||||| ||| Sbjct 31073222 ACGAAAGCTAGGGAAGCAAATGGGATTAGATACCCCAGTAGTCCTAGCTGTAAACGATG 31073280 Score = 37.4 bits (40), Expect = 6.1 Identities = 26/30 (87%), Gaps = 0/30 (0%) Strand=Plus/Minus Query 423 AATCATAATAACtttttttttttttttttt 452 ||||||||||| || ||||||||||||| Sbjct 47863860 AATCATAATAATATTACTTTTTTTTTTTTT 47863831 >NC_002753.1:172702-174741 on lcl|Jr5S| NC_002753.1:172702-174741 on lcl|Jr5S Length=32184663 Score = 44.6 bits (48), Expect = 0.041 Identities = 27/29 (93%), Gaps = 0/29 (0%) Strand=Plus/Minus Query 423 AATCATAATAACttttttttttttttttt 451 ||||||||||| |||||||||||| |||| Sbjct 10062165 AATCATAATAAGTTTTTTTTTTTTATTTT 10062137 Score = 37.4 bits (40), Expect = 6.1 Identities = 25/28 (89%), Gaps = 0/28 (0%) Strand=Plus/Minus Query 423 AATCATAATAACtttttttttttttttt 450 ||||||||||| | ||||||||||||| Sbjct 4468826 AATCATAATAATGTCTTTTTTTTTTTTT 4468799 >NC_002753.1:172702-174741 on lcl|Jr7S| NC_002753.1:172702-174741 on lcl|Jr7S Length=22705590 Score = 42.8 bits (46), Expect = 0.14 Identities = 29/33 (88%), Gaps = 0/33 (0%) Strand=Plus/Plus Query 420 ATGAATCATAATAACtttttttttttttttttt 452 |||||||||||| ||| |||||||||||||| Sbjct 17338452 ATGAATCATAATTTCTTGGTTTTTTTTTTTTTT 17338484 Score = 37.4 bits (40), Expect = 6.1 Identities = 20/20 (100%), Gaps = 0/20 (0%) Strand=Plus/Minus Query 1566 CTTGACCTGCTAATTAGCCC 1585 |||||||||||||||||||| Sbjct 8604742 CTTGACCTGCTAATTAGCCC 8604723 >NC_002753.1:172702-174741 on lcl|Jr7D| NC_002753.1:172702-174741 on lcl|Jr7D Length=29017359 Score = 41.0 bits (44), Expect = 0.50 Identities = 27/30 (90%), Gaps = 0/30 (0%) Strand=Plus/Minus Query 423 AATCATAATAACtttttttttttttttttt 452 ||||||||||| ||||| |||| ||||||| Sbjct 1279540 AATCATAATAATTTTTTGTTTTATTTTTTT 1279511 >NC_002753.1:172702-174741 on lcl|Jr2S| NC_002753.1:172702-174741 on lcl|Jr2S Length=37319718 Score = 39.2 bits (42), Expect = 1.8 Identities = 23/24 (96%), Gaps = 0/24 (0%) Strand=Plus/Minus Query 285 ACAACGAAAAGGTTGAGCCACCAA 308 ||||| |||||||||||||||||| Sbjct 12752934 ACAACCAAAAGGTTGAGCCACCAA 12752911 Score = 39.2 bits (42), Expect = 1.8 Identities = 24/26 (92%), Gaps = 0/26 (0%) Strand=Plus/Minus Query 527 TTGGGTAGTGGCCAACCATGGTGTTG 552 |||| || |||||||||||||||||| Sbjct 13823142 TTGGATAATGGCCAACCATGGTGTTG 13823117 Score = 37.4 bits (40), Expect = 6.1 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Minus Query 367 TATTAGATCAAAAACCAATCGCATC 391 || ||||||||||||| |||||||| Sbjct 36911920 TAATAGATCAAAAACCCATCGCATC 36911896 >NC_002753.1:172702-174741 on lcl|Jr1S| NC_002753.1:172702-174741 on lcl|Jr1S Length=29818788 Score = 39.2 bits (42), Expect = 1.8 Identities = 46/60 (77%), Gaps = 3/60 (5%) Strand=Plus/Plus Query 1205 ACGAAAGTTAGGGGATCGAA-GACGATTAGATACCGTCGTAGTCTTAACCATAAACTATG 1263 || |||||||||||| |||| || ||| ||| | | |||||| || | |||||| ||| Sbjct 29613324 ACAAAAGTTAGGGGAGCGAATGA--ATTGAATATCCTAGTAGTCCTAGCTATAAACGATG 29613381 >NC_002753.1:172702-174741 on lcl|Jr3S| NC_002753.1:172702-174741 on lcl|Jr3S Length=28458890 Score = 37.4 bits (40), Expect = 6.1 Identities = 20/20 (100%), Gaps = 0/20 (0%) Strand=Plus/Plus Query 418 GGATGAATCATAATAACttt 437 |||||||||||||||||||| Sbjct 10307365 GGATGAATCATAATAACTTT 10307384 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073616542744 Database: JrSerr_genome.fa Posted date: Apr 26, 2019 2:59 PM Number of letters in database: 534,671,929 Number of sequences in database: 73 Matrix: blastn matrix 2 -3 Gap Penalties: Existence: 5, Extension: 2