BLAST Results




BLASTN 2.2.28+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Database: JrSerr_genome.fa
           73 sequences; 534,671,929 total letters



Query= 
Length=21
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

lcl|Jr8D                                                              39.2    0.003
lcl|Jr6D                                                              39.2    0.003
lcl|Jr4S                                                              39.2    0.003
lcl|JrScfU0001                                                        33.7    0.11 
lcl|Jr1S                                                              30.1    1.4  
lcl|Jr2D                                                              28.3    4.7  


>Query1 on lcl|Jr8D| Query1 on lcl|Jr8D 
Length=35197335

 Score = 39.2 bits (42),  Expect = 0.003
 Identities = 21/21 (100%), Gaps = 0/21 (0%)
 Strand=Plus/Minus

Query  1        GGTCAATCTTCTCGTTCCCTT  21
                |||||||||||||||||||||
Sbjct  4697417  GGTCAATCTTCTCGTTCCCTT  4697397


 Score = 33.7 bits (36),  Expect = 0.11
 Identities = 20/21 (95%), Gaps = 0/21 (0%)
 Strand=Plus/Minus

Query  1         GGTCAATCTTCTCGTTCCCTT  21
                 ||||||||||||| |||||||
Sbjct  18356053  GGTCAATCTTCTCATTCCCTT  18356033


>Query1 on lcl|Jr6D| Query1 on lcl|Jr6D 
Length=37991167

 Score = 39.2 bits (42),  Expect = 0.003
 Identities = 21/21 (100%), Gaps = 0/21 (0%)
 Strand=Plus/Minus

Query  1        GGTCAATCTTCTCGTTCCCTT  21
                |||||||||||||||||||||
Sbjct  8859508  GGTCAATCTTCTCGTTCCCTT  8859488


>Query1 on lcl|Jr4S| Query1 on lcl|Jr4S 
Length=30027985

 Score = 39.2 bits (42),  Expect = 0.003
 Identities = 21/21 (100%), Gaps = 0/21 (0%)
 Strand=Plus/Plus

Query  1         GGTCAATCTTCTCGTTCCCTT  21
                 |||||||||||||||||||||
Sbjct  17965242  GGTCAATCTTCTCGTTCCCTT  17965262


 Score = 28.3 bits (30),  Expect = 4.7
 Identities = 15/15 (100%), Gaps = 0/15 (0%)
 Strand=Plus/Minus

Query  6       ATCTTCTCGTTCCCT  20
               |||||||||||||||
Sbjct  886015  ATCTTCTCGTTCCCT  886001


>Query1 on lcl|JrScfU0001| Query1 on lcl|JrScfU0001 
Length=1158772

 Score = 33.7 bits (36),  Expect = 0.11
 Identities = 20/21 (95%), Gaps = 0/21 (0%)
 Strand=Plus/Minus

Query  1      GGTCAATCTTCTCGTTCCCTT  21
              ||||||||||||| |||||||
Sbjct  65947  GGTCAATCTTCTCATTCCCTT  65927


>Query1 on lcl|Jr1S| Query1 on lcl|Jr1S 
Length=29818788

 Score = 30.1 bits (32),  Expect = 1.4
 Identities = 16/16 (100%), Gaps = 0/16 (0%)
 Strand=Plus/Plus

Query  1        GGTCAATCTTCTCGTT  16
                ||||||||||||||||
Sbjct  6190956  GGTCAATCTTCTCGTT  6190971


>Query1 on lcl|Jr2D| Query1 on lcl|Jr2D 
Length=43955564

 Score = 28.3 bits (30),  Expect = 4.7
 Identities = 15/15 (100%), Gaps = 0/15 (0%)
 Strand=Plus/Plus

Query  6         ATCTTCTCGTTCCCT  20
                 |||||||||||||||
Sbjct  10781689  ATCTTCTCGTTCCCT  10781703


 Score = 28.3 bits (30),  Expect = 4.7
 Identities = 15/15 (100%), Gaps = 0/15 (0%)
 Strand=Plus/Plus

Query  5         AATCTTCTCGTTCCC  19
                 |||||||||||||||
Sbjct  39786894  AATCTTCTCGTTCCC  39786908



Lambda      K        H
   0.634    0.408    0.912 

Gapped
Lambda      K        H
   0.625    0.410    0.780 

Effective search space used: 1604011845


  Database: JrSerr_genome.fa
    Posted date:  Apr 26, 2019  2:59 PM
  Number of letters in database: 534,671,929
  Number of sequences in database:  73



Matrix: blastn matrix 2 -3
Gap Penalties: Existence: 5, Extension: 2