BLAST Results




BLASTP 2.2.28+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.


Reference for
composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: test_aa_db
           214 sequences; 49,279 total letters



Query= 
Length=491
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  gi|6693827|gb|AAF24999.1| (AF141320) endo-inulinase [Pseudomona...  21.6    6.3  


> Query1 on gi|6693827|gb|AAF24999.1| (AF141320) endo-inulinase [Pseudomonas 
mucidolens]
Length=776

 Score = 21.6 bits (44),  Expect = 6.3, Method: Compositional matrix adjust.
 Identities = 9/22 (41%), Positives = 14/22 (64%), Gaps = 0/22 (0%)

Query  175  ESMDLWSEDQPVLLQDVSKTVA  196
            E +++WSED P+   + S  VA
Sbjct  136  EWIEVWSEDHPLPKNEWSYVVA  157



Lambda      K        H        a         alpha
   0.321    0.137    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 15193941


  Database: test_aa_db
    Posted date:  Jul 19, 2010  4:26 PM
  Number of letters in database: 49,279
  Number of sequences in database:  214



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40