BLAST Results




BLASTN 2.2.28+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Database: JrSerr_genome.fa
           73 sequences; 534,671,929 total letters



Query= chr12_6444339_6444539

Length=200
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

lcl|Jr2D                                                              41.0    0.043
lcl|Jr5S                                                              39.2    0.15 
lcl|Jr6D                                                              37.4    0.52 
lcl|Jr8D                                                              35.6    1.8  
lcl|Jr1D                                                              35.6    1.8  
lcl|Jr7D                                                              33.7    6.3  
lcl|Jr2S                                                              33.7    6.3  


>chr12_6444339_6444539 on lcl|Jr2D| chr12_6444339_6444539 on lcl|Jr2D 
Length=43955564

 Score = 41.0 bits (44),  Expect = 0.043
 Identities = 30/34 (88%), Gaps = 2/34 (6%)
 Strand=Plus/Minus

Query  71        GGGGAGGAGAGTAAAA--GGGAAAGGTTGGGGAT  102
                 ||||| |||| |||||  ||||||||||||||||
Sbjct  36771601  GGGGAAGAGACTAAAACAGGGAAAGGTTGGGGAT  36771568


 Score = 33.7 bits (36),  Expect = 6.3
 Identities = 20/21 (95%), Gaps = 0/21 (0%)
 Strand=Plus/Minus

Query  73        GGAGGAGAGTAAAAGGGAAAG  93
                 |||||||||||||| ||||||
Sbjct  35675580  GGAGGAGAGTAAAAAGGAAAG  35675560


 Score = 33.7 bits (36),  Expect = 6.3
 Identities = 20/21 (95%), Gaps = 0/21 (0%)
 Strand=Plus/Plus

Query  80        AGTAAAAGGGAAAGGTTGGGG  100
                 ||||||||||||||| |||||
Sbjct  37443558  AGTAAAAGGGAAAGGGTGGGG  37443578


>chr12_6444339_6444539 on lcl|Jr5S| chr12_6444339_6444539 on lcl|Jr5S 
Length=32184663

 Score = 39.2 bits (42),  Expect = 0.15
 Identities = 24/26 (92%), Gaps = 0/26 (0%)
 Strand=Plus/Plus

Query  66        CAAATGGGGAGGAGAGTAAAAGGGAA  91
                 ||||||| |||| |||||||||||||
Sbjct  27762462  CAAATGGAGAGGGGAGTAAAAGGGAA  27762487


 Score = 33.7 bits (36),  Expect = 6.3
 Identities = 20/21 (95%), Gaps = 0/21 (0%)
 Strand=Plus/Plus

Query  60       CAAGGACAAATGGGGAGGAGA  80
                |||||| ||||||||||||||
Sbjct  5918667  CAAGGAGAAATGGGGAGGAGA  5918687


>chr12_6444339_6444539 on lcl|Jr6D| chr12_6444339_6444539 on lcl|Jr6D 
Length=37991167

 Score = 37.4 bits (40),  Expect = 0.52
 Identities = 25/27 (93%), Gaps = 1/27 (4%)
 Strand=Plus/Minus

Query  75        AGGAGAGTAAAAGGGAAAGGTTGGGGA  101
                 |||||| |||||| |||||||||||||
Sbjct  11160730  AGGAGA-TAAAAGTGAAAGGTTGGGGA  11160705


 Score = 35.6 bits (38),  Expect = 1.8
 Identities = 22/24 (92%), Gaps = 0/24 (0%)
 Strand=Plus/Minus

Query  69        ATGGGGAGGAGAGTAAAAGGGAAA  92
                 |||||||||||||  |||||||||
Sbjct  16061137  ATGGGGAGGAGAGAGAAAGGGAAA  16061114


>chr12_6444339_6444539 on lcl|Jr8D| chr12_6444339_6444539 on lcl|Jr8D 
Length=35197335

 Score = 35.6 bits (38),  Expect = 1.8
 Identities = 19/19 (100%), Gaps = 0/19 (0%)
 Strand=Plus/Minus

Query  14        CTGGCCCATCCCCTCCACC  32
                 |||||||||||||||||||
Sbjct  22119426  CTGGCCCATCCCCTCCACC  22119408


 Score = 33.7 bits (36),  Expect = 6.3
 Identities = 21/23 (91%), Gaps = 0/23 (0%)
 Strand=Plus/Minus

Query  19       CCATCCCCTCCACCTCAAAATTT  41
                |||| ||||| ||||||||||||
Sbjct  4942816  CCATTCCCTCTACCTCAAAATTT  4942794


 Score = 33.7 bits (36),  Expect = 6.3
 Identities = 21/23 (91%), Gaps = 0/23 (0%)
 Strand=Plus/Minus

Query  67        AAATGGGGAGGAGAGTAAAAGGG  89
                 ||||||||||||||| ||| |||
Sbjct  22007748  AAATGGGGAGGAGAGAAAATGGG  22007726


>chr12_6444339_6444539 on lcl|Jr1D| chr12_6444339_6444539 on lcl|Jr1D 
Length=51893103

 Score = 35.6 bits (38),  Expect = 1.8
 Identities = 22/24 (92%), Gaps = 0/24 (0%)
 Strand=Plus/Minus

Query  69        ATGGGGAGGAGAGTAAAAGGGAAA  92
                 ||||||||||||| |||| |||||
Sbjct  17693127  ATGGGGAGGAGAGAAAAATGGAAA  17693104


 Score = 33.7 bits (36),  Expect = 6.3
 Identities = 26/30 (87%), Gaps = 2/30 (7%)
 Strand=Plus/Plus

Query  5         TCACATT--CCCTGGCCCATCCCCTCCACC  32
                 |||||||  ||| ||||| |||||||||||
Sbjct  26194733  TCACATTGCCCCAGGCCCTTCCCCTCCACC  26194762


>chr12_6444339_6444539 on lcl|Jr7D| chr12_6444339_6444539 on lcl|Jr7D 
Length=29017359

 Score = 33.7 bits (36),  Expect = 6.3
 Identities = 21/23 (91%), Gaps = 0/23 (0%)
 Strand=Plus/Minus

Query  13       CCTGGCCCATCCCCTCCACCTCA  35
                |||||||||||||||| | ||||
Sbjct  2432729  CCTGGCCCATCCCCTCTAGCTCA  2432707


 Score = 33.7 bits (36),  Expect = 6.3
 Identities = 18/18 (100%), Gaps = 0/18 (0%)
 Strand=Plus/Minus

Query  83        AAAAGGGAAAGGTTGGGG  100
                 ||||||||||||||||||
Sbjct  13484381  AAAAGGGAAAGGTTGGGG  13484364


 Score = 33.7 bits (36),  Expect = 6.3
 Identities = 21/23 (91%), Gaps = 0/23 (0%)
 Strand=Plus/Plus

Query  72        GGGAGGAGAGTAAAAGGGAAAGG  94
                 ||||||||||  |||||||||||
Sbjct  18833790  GGGAGGAGAGAGAAAGGGAAAGG  18833812


>chr12_6444339_6444539 on lcl|Jr2S| chr12_6444339_6444539 on lcl|Jr2S 
Length=37319718

 Score = 33.7 bits (36),  Expect = 6.3
 Identities = 21/23 (91%), Gaps = 0/23 (0%)
 Strand=Plus/Plus

Query  86       AGGGAAAGGTTGGGGATCCTGCA  108
                ||| ||||||||||||| |||||
Sbjct  9490121  AGGTAAAGGTTGGGGATTCTGCA  9490143



Lambda      K        H
   0.634    0.408    0.912 

Gapped
Lambda      K        H
   0.625    0.410    0.780 

Effective search space used: 91428537852


  Database: JrSerr_genome.fa
    Posted date:  Apr 26, 2019  2:59 PM
  Number of letters in database: 534,671,929
  Number of sequences in database:  73



Matrix: blastn matrix 2 -3
Gap Penalties: Existence: 5, Extension: 2