BLAST Results
BLASTN 2.2.28+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: JrSerr_genome.fa 73 sequences; 534,671,929 total letters Query= Length=1531 Score E Sequences producing significant alignments: (Bits) Value lcl|Jr5D 2511 0.0 lcl|Jr5S 1339 0.0 lcl|Jr7D 821 0.0 lcl|Jr6D 44.6 0.031 lcl|Jr4S 41.0 0.37 lcl|Jr3S 41.0 0.37 lcl|Jr2D 41.0 0.37 lcl|Jr8D 39.2 1.3 lcl|Jr6S 39.2 1.3 lcl|Jr4D 39.2 1.3 lcl|Jr3D 39.2 1.3 lcl|Jr1D 39.2 1.3 lcl|JrScfU0004 37.4 4.6 lcl|Jr7S 37.4 4.6 >Query1 on lcl|Jr5D| Query1 on lcl|Jr5D Length=33932481 Score = 2511 bits (2784), Expect = 0.0 Identities = 1400/1405 (99%), Gaps = 0/1405 (0%) Strand=Plus/Minus Query 127 TTTTCTCAGGTTGGAAAAGCAATGGGTGCCGGTGGCCGAATGGTAGCTCCCCTAACTCCC 186 |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2616681 TTTTTGCAGGTTGGAAAAGCAATGGGTGCCGGTGGCCGAATGGTAGCTCCCCTAACTCCC 2616622 Query 187 AGTAAATCTGAATCTGGCAGTCTGAAGCGAGTTCCACACTCAAAGCCCCCATTTACCCTC 246 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2616621 AGTAAATCTGAATCTGGCAGTCTGAAGCGAGTTCCACACTCAAAGCCCCCATTTACCCTC 2616562 Query 247 AGCCAGGTCAAGAAAGCCGTCCCACCTCATTGTTTCCAGCGTTCTGTACTCCACTCATTC 306 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2616561 AGCCAGGTCAAGAAAGCCGTCCCACCTCATTGTTTCCAGCGTTCTGTACTCCACTCATTC 2616502 Query 307 TCCTATGTTGTTTACGACTTCGCTATAACCTCTATCTTCTATTATATTGCTACCAATTAC 366 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2616501 TCCTATGTTGTTTACGACTTCGCTATAACCTCTATCTTCTATTATATTGCTACCAATTAC 2616442 Query 367 TTCCACCACCTTCCTCAACCACTCTCTTACCTTGCTTGGCCAATTTACTGGATTATTCAA 426 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2616441 TTCCACCACCTTCCTCAACCACTCTCTTACCTTGCTTGGCCAATTTACTGGATTATTCAA 2616382 Query 427 GGTTGTGTCCTGACAGGCGTTTGGGTCATAGCTCATGAGTGTGGACACCATGCCTTCAGC 486 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2616381 GGTTGTGTCCTGACAGGCGTTTGGGTCATAGCTCATGAGTGTGGACACCATGCCTTCAGC 2616322 Query 487 GACTACCAGTTGCTTGATGACATAGTTGGTCTAATTCTCCACTCCTTTCTTCTTGTCCCT 546 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2616321 GACTACCAGTTGCTTGATGACATAGTTGGTCTAATTCTCCACTCCTTTCTTCTTGTCCCT 2616262 Query 547 TACTTCTCCTGGAAGTATAGCCACGGCCGCCATCATTCTAACACGGGTTCCCTTGAGCGT 606 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2616261 TACTTCTCCTGGAAGTATAGCCACGGCCGCCATCATTCTAACACGGGTTCCCTTGAGCGT 2616202 Query 607 GATGAGGTCTTCGTCCCTAAGAAAAAATCTAGTATCCCATGGTACTCCAAATACCTGAAC 666 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 2616201 GATGAGGTCTTCGTCCCTAAGAAAAAATCTAGTATCCCATGGTATTCCAAATACCTGAAC 2616142 Query 667 AATCCACCAGGCCGGGTGGTCACACTAGCAATCACACTGACTCTAGGCTGGCCTCTCTAC 726 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2616141 AATCCACCAGGCCGGGTGGTCACACTAGCAATCACACTGACTCTAGGCTGGCCTCTCTAC 2616082 Query 727 CTAACTCTTAATGTTTCAGGCAGGCCATATGATCGGTTTGCAAGCCACTATAACCCTTAC 786 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2616081 CTAACTCTTAATGTTTCAGGCAGGCCATATGATCGGTTTGCAAGCCACTATAACCCTTAC 2616022 Query 787 GGCCCCATCTACACAGATCGCCAGAGATTCCAAATATACATTTCTGATGCTGGTGTTCTT 846 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2616021 GGCCCCATCTACACAGATCGCCAGAGATTCCAAATATACATTTCTGATGCTGGTGTTCTT 2615962 Query 847 GCTGTCTCTTATGGGCTCTACCGTCTTGCCATGGTGAAAGGACTTATGTGGGTTATATGC 906 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 2615961 GCTGTCTCTTATGGGCTCTACCGTCTTGCCATGGTGAAAGGACTTATATGGGTTATATGC 2615902 Query 907 ATTTACGGAGTACCATTGCTGATCGTGAATGGGTTTTTGGTGTTGATCACGTTTCTGCAA 966 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 2615901 ATTTACGGAGTACCATTGCTGATCGTGAATGGGTTTTTGGTGCTGATCACGTTTCTGCAA 2615842 Query 967 CACACTCACCCATCATTGCCCCATTATGATTCCTCCGAGTGGGACTGGTTGAGAGGAGCT 1026 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2615841 CACACTCACCCATCATTGCCCCATTATGATTCCTCCGAGTGGGACTGGTTGAGAGGAGCT 2615782 Query 1027 TTGGCAACTGTTGACAGAGATTATGGAATCTTGAACAAGATTTTCCACAACATCACAGAT 1086 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2615781 TTGGCAACTGTTGACAGAGATTATGGAATCTTGAACAAGATTTTCCACAACATCACAGAT 2615722 Query 1087 ACTCATGTGGCACACCATTTGTTCTCAACCATGCCGCATTATCATGCAATGGAAGCTACA 1146 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2615721 ACTCATGTGGCACACCATTTGTTCTCAACCATGCCGCATTATCATGCAATGGAAGCTACA 2615662 Query 1147 AAGGCGATCAAGCCAATTTTGGGAGATTATTATCAGTTTGATGGCACACCGGTTTATAAA 1206 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2615661 AAGGCGATCAAGCCAATTTTGGGAGATTATTATCAGTTTGATGGCACACCGGTTTATAAA 2615602 Query 1207 GCAATGTGGAGGGAGGCAAAGGAGTGTCTTTATGTTGAACCAGATGAAGGTGGGCAGAGC 1266 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2615601 GCAATGTGGAGGGAGGCAAAGGAGTGTCTTTATGTTGAACCAGATGAAGGTGGGCAGAGC 2615542 Query 1267 AAAGGTGTGTTCTGGTACAACAACAAGCTGTGATGATTGAAACTGGCAAAATGTTGGTTC 1326 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2615541 AAAGGTGTGTTCTGGTACAACAACAAGCTGTGATGATTGAAACTGGCAAAATGTTGGTTC 2615482 Query 1327 GAGATTTTCAGATTCTTGTTAGAATATTAGTATTCCTGGCAGGGTAATTTTAAGTTGTTT 1386 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2615481 GAGATTTTCAGATTCTTGTTAGAATATTAGTATTCCTGGCAGGGTAATTTTAAGTTGTTT 2615422 Query 1387 ACTCACTCCGAATTGGACCTCCAGTTCTACTTGTGCTTTCCAATAATTTTCTTGAGCCCT 1446 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2615421 ACTCACTCCGAATTGGACCTCCAGTTCTACTTGTGCTTTCCAATAATTTTCTTGAGCCCT 2615362 Query 1447 TGTCGTGGTAGAAACTAAAGACAAGACATTTTATGTTCTGATATGAGTATTGTTTCTCGA 1506 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2615361 TGTCGTGGTAGAAACTAAAGACAAGACATTTTATGTTCTGATATGAGTATTGTTTCTCGA 2615302 Query 1507 TAAAAATTTGGCACATATTTAAATT 1531 ||||||||||||||||||||||||| Sbjct 2615301 TAAAAATTTGGCACATATTTAAATT 2615277 Score = 248 bits (274), Expect = 1e-63 Identities = 137/137 (100%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 1 AGGCTTAAATACAAGCCTACGAGAGGTCTTAAAAGAGGCCGGCTTTTCATCGGCCAGCGT 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2619546 AGGCTTAAATACAAGCCTACGAGAGGTCTTAAAAGAGGCCGGCTTTTCATCGGCCAGCGT 2619487 Query 61 CTCCACTCagagagagagagagagagagagagagaTTCATTGAAGTTCAAGGGCTGGGCT 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2619486 CTCCACTCAGAGAGAGAGAGAGAGAGAGAGAGAGATTCATTGAAGTTCAAGGGCTGGGCT 2619427 Query 121 TCTATATTTTCTCAGGT 137 ||||||||||||||||| Sbjct 2619426 TCTATATTTTCTCAGGT 2619410 Score = 37.4 bits (40), Expect = 4.6 Identities = 20/20 (100%), Gaps = 0/20 (0%) Strand=Plus/Plus Query 751 CCATATGATCGGTTTGCAAG 770 |||||||||||||||||||| Sbjct 13552647 CCATATGATCGGTTTGCAAG 13552666 >Query1 on lcl|Jr5S| Query1 on lcl|Jr5S Length=32184663 Score = 1339 bits (1484), Expect = 0.0 Identities = 1016/1194 (85%), Gaps = 16/1194 (1%) Strand=Plus/Minus Query 119 CTTCTATATTTTCTCAGGTTGGAAAAGCAATGGGTGCCGGTGGCCGAATGGTAGCTCCCC 178 ||||| | | || ||||||| | || | |||||||||||||| |||||| ||||| || Sbjct 2311126 CTTCTCTTTGTTTGCAGGTTGAAGAA-CGATGGGTGCCGGTGGTCGAATGACAGCTCTCC 2311068 Query 179 TAACTCCCAGTAAATCTGA---ATCTGGCAGTC---TGAAGCGAGTTCCACACTCAAAGC 232 ||| ||| || ||||| ||| | ||| | ||||||||||||| ||| |||||| Sbjct 2311067 CGACTGCCAACAAGTCTGATCAATCCGACAGGCCGCTGAAGCGAGTTCCCCACACAAAGC 2311008 Query 233 CCCCATTTACCCTCAGCCAGGTCAAGAAAGCCGTCCCACCTCATTGTTTCCAGCGTTCTG 292 |||||||||| || |||||| | ||||||||| ||||||||||||||||||||||||||| Sbjct 2311007 CCCCATTTACACTGAGCCAGATAAAGAAAGCCATCCCACCTCATTGTTTCCAGCGTTCTG 2310948 Query 293 TACTCCACTCATTCTCCTATGTTGTTTACGACTTCGCTATAACCTCTATCTTCTATTATA 352 || || ||| |||||||| |||||||||||| |||| || ||||| ||||| || | Sbjct 2310947 TATACCGCTCTTTCTCCTACGTTGTTTACGACCTCGCACTAGCCTCTCTCTTCCTCTACA 2310888 Query 353 TTGCTACCAATTACTT---CCACCACCTTCCTCAACCACT---CTCTTACCTTGCTTGGC 406 |||| ||||||||||| ||||||||||||||| | ||| ||| ||||| ||||||| Sbjct 2310887 TTGCCACCAATTACTTGATCCACCACCTTCCTCATCAACTTCTCTCATACCTGGCTTGGC 2310828 Query 407 CAATTTACTGGATTATTCAAGGTTGTGTCCTGACAGGCGTTTGGGTCATAGCTCATGAGT 466 |||| ||||||||| |||||||||||||| || ||| | |||||||||||||| |||| Sbjct 2310827 CAATCTACTGGATTTCCCAAGGTTGTGTCCTCACTGGCCTCTGGGTCATAGCTCACGAGT 2310768 Query 467 GTGGACACCATGCCTTCAGCGACTACCAGTTGCTTGATGACATAGTTGGTCTAATTCTCC 526 |||| |||||||||||||| |||||||| | ||| |||||| | ||||| | || |||| Sbjct 2310767 GTGGCCACCATGCCTTCAGTGACTACCAATGGCTCGATGACTTGGTTGGCTTCATCCTCC 2310708 Query 527 ACTCCTTTCTTCTTGTCCCTTACTTCTCCTGGAAGTATAGCCACGGCCGCCATCATTCTA 586 ||||| |||||||||||||||||||||||||||||| ||||| |||||||| ||||||| Sbjct 2310707 ACTCCGGTCTTCTTGTCCCTTACTTCTCCTGGAAGTACAGCCATGGCCGCCACCATTCTA 2310648 Query 587 ACACGGGTTCCCTTGAGCGTGATGAGGTCTTCGTCCCTAAGAAAAAATCTAGTATCCCAT 646 | || |||||||||||||| ||||| ||||| || || ||||||||||| || ||| || Sbjct 2310647 ATACAGGTTCCCTTGAGCGAGATGAAGTCTTTGTTCCGAAGAAAAAATCCAGCATCGGAT 2310588 Query 647 GGTACTCCAAATACCTGAACAATCCACCAGGCCGGGTGGTCACACTAGCAATCACACTGA 706 |||||||||||||||| ||||||||||||||||| || ||||||| || |||||||| | Sbjct 2310587 GGTACTCCAAATACCTTAACAATCCACCAGGCCGAGTCCTCACACTTGCCATCACACTCA 2310528 Query 707 CTCTAGGCTGGCCTCTCTACCTAACTCTTAATGTTTCAGGCAGGCCATATGATCGGTTTG 766 ||| ||||||||||| ||||| || |||| ||||| |||||||| ||||||| ||||| Sbjct 2310527 TTCTCGGCTGGCCTCTGTACCTCACATTTAACGTTTCCGGCAGGCCCTATGATCAGTTTG 2310468 Query 767 CAAGCCACTATAACCCTTACGGCCCCATCTACACAGATCGCCAGAGATTCCAAATATACA 826 |||||||||| ||||||| |||||||||||| | ||||||||| || |||| ||||||| Sbjct 2310467 CAAGCCACTACGACCCTTATGGCCCCATCTACTCGGATCGCCAGCGACTCCAGATATACA 2310408 Query 827 TTTCTGATGCTGGTGTTCTTGCTGTCTCTTATGGGCTCTACCGTCTTGCCATGGTGAAAG 886 |||||||||| ||||||||||| |||| ||| ||||| ||||| |||||||||| ||| | Sbjct 2310407 TTTCTGATGCCGGTGTTCTTGCCGTCTTTTACGGGCTTTACCGCCTTGCCATGGCGAAGG 2310348 Query 887 GACTTATGTGGGTTATATGCATTTACGGAGTACCATTGCTGATCGTGAATGGGTTTTTGG 946 ||||| |||||| |||| |||||||||| ||| |||||| ||||||||||||| |||| Sbjct 2310347 GACTTGCTTGGGTTCTATGTATTTACGGAGGACCTTTGCTGGTCGTGAATGGGTTCTTGG 2310288 Query 947 TGTTGATCACGTTTCTGCAACACACTCACCCATCATTGCCCCATTATGATTCCTCCGAGT 1006 || ||||||||||| |||| ||||||||||| || ||||||||||| |||||| |||| | Sbjct 2310287 TGCTGATCACGTTTTTGCAGCACACTCACCCTTCGTTGCCCCATTACGATTCCACCGAAT 2310228 Query 1007 GGGACTGGTTGAGAGGAGCTTTGGCAACTGTTGACAGAGATTATGGAATCTTGAACAAGA 1066 ||||||||||||||||||||||| |||| |||||||| |||||||||||||||||||||| Sbjct 2310227 GGGACTGGTTGAGAGGAGCTTTGTCAACAGTTGACAGGGATTATGGAATCTTGAACAAGA 2310168 Query 1067 TTTTCCACAACATCACAGATACTCATGTGGCACACCATTTGTTCTCAACCATGCCGCATT 1126 |||||||||||||||||||||| |||||||| ||||| |||||||| || |||||||||| Sbjct 2310167 TTTTCCACAACATCACAGATACGCATGTGGCGCACCACTTGTTCTCGACGATGCCGCATT 2310108 Query 1127 ATCATGCAATGGAAGCTACAAAGGCGATCAAGCCAATTTTGGGAGATTATTATCAGTTTG 1186 ||||||||||||| || || ||||| || || || ||||||||||||||||||||||||| Sbjct 2310107 ATCATGCAATGGAGGCCACGAAGGCAATAAAACCTATTTTGGGAGATTATTATCAGTTTG 2310048 Query 1187 ATGGCACACCGGTTTATAAAGCAATGTGGAGGGAGGCAAAGGAGTGTCTTTATGTTGAAC 1246 | || ||||| ||||||| |||| ||||||||||||||||||||| |||||||||||| Sbjct 2310047 ACGGGACACCAATTTATAAGGCAACGTGGAGGGAGGCAAAGGAGTGCATTTATGTTGAAC 2309988 Query 1247 CAGATGAAGGTGG---GCAGAGCAAAGGTGTGTTCTGGTACAACAACAAGCTGT 1297 | ||||||||||| |||||||||||||| ||||||||| ||| ||||||| Sbjct 2309987 CGGATGAAGGTGGCGCCCAGAGCAAAGGTGTCTTCTGGTACGCCAATAAGCTGT 2309934 Score = 71.6 bits (78), Expect = 2e-10 Identities = 71/89 (80%), Gaps = 6/89 (7%) Strand=Plus/Minus Query 48 CATCGGCCAGCGTCTCCACTCagagagagagagagag--agagagagagaTTCATTGAAG 105 ||||||||||||| ||| ||| |||||||||||||| ||||||||||||| ||| | Sbjct 2312968 CATCGGCCAGCGTTTCCGTTCACAGAGAGAGAGAGAGAGAGAGAGAGAGATTGATT-AGT 2312910 Query 106 TTCAAGGGCTGG---GCTTCTATATTTTC 131 ||| | ||| | |||||| ||||||| Sbjct 2312909 TTCGGGAGCTAGCTAGCTTCTCTATTTTC 2312881 Score = 39.2 bits (42), Expect = 1.3 Identities = 27/31 (87%), Gaps = 0/31 (0%) Strand=Plus/Plus Query 933 GAATGGGTTTTTGGTGTTGATCACGTTTCTG 963 |||| ||||||||||||||| | ||||||| Sbjct 22904190 GAATTTGTTTTTGGTGTTGATGAGGTTTCTG 22904220 Score = 37.4 bits (40), Expect = 4.6 Identities = 27/30 (90%), Gaps = 1/30 (3%) Strand=Plus/Minus Query 1411 TTCTACTTGTGCTTTCCAATAATTTTCTTG 1440 |||||| || ||||||||||||||||||| Sbjct 5901689 TTCTACG-GTACTTTCCAATAATTTTCTTG 5901661 >Query1 on lcl|Jr7D| Query1 on lcl|Jr7D Length=29017359 Score = 821 bits (910), Expect = 0.0 Identities = 841/1098 (77%), Gaps = 0/1098 (0%) Strand=Plus/Plus Query 204 CAGTCTGAAGCGAGTTCCACACTCAAAGCCCCCATTTACCCTCAGCCAGGTCAAGAAAGC 263 || ||| ||||||| |||||| ||||||| ||||| || || ||||| | |||||||| Sbjct 27643229 CACTCTCCAGCGAGTGCCACACACAAAGCCTCCATTCACACTTAGCCAACTTAAGAAAGC 27643288 Query 264 CGTCCCACCTCATTGTTTCCAGCGTTCTGTACTCCACTCATTCTCCTATGTTGTTTACGA 323 | ||||||| || |||||||| ||||| | ||| ||||||||||||||||| |||||| Sbjct 27643289 CATCCCACCACACTGTTTCCAACGTTCCCTCTTCCGCTCATTCTCCTATGTTGCTTACGA 27643348 Query 324 CTTCGCTATAACCTCTATCTTCTATTATATTGCTACCAATTACTTCCACCACCTTCCTCA 383 | || | ||| ||||||| || ||||||||| ||||||||||| ||| ||||| Sbjct 27643349 CCTCTTCTTCGCCTTCCTCTTCTACTACATTGCTACCTCTTACTTCCACCTCCTCCCTCA 27643408 Query 384 ACCACTCTCTTACCTTGCTTGGCCAATTTACTGGATTATTCAAGGTTGTGTCCTGACAGG 443 ||||| |||||| |||| |||||||| || |||| | | ||||| || | || || || Sbjct 27643409 CCCACTTTCTTACTTTGCATGGCCAATCTATTGGACTCTCCAAGGCTGCATTCTCACTGG 27643468 Query 444 CGTTTGGGTCATAGCTCATGAGTGTGGACACCATGCCTTCAGCGACTACCAGTTGCTTGA 503 ||||||||||| |||||||||||||| |||||||||||||| |||||||| | | | || Sbjct 27643469 TGTTTGGGTCATTGCTCATGAGTGTGGTCACCATGCCTTCAGTGACTACCAATGGGTCGA 27643528 Query 504 TGACATAGTTGGTCTAATTCTCCACTCCTTTCTTCTTGTCCCTTACTTCTCCTGGAAGTA 563 ||||| ||||| ||| | |||||||| |||| | || || |||||||| ||||| Sbjct 27643529 TGACACGGTTGGCCTAGTCCTCCACTCTGCTCTTTTGGTGCCCTACTTCTCATGGAAAAT 27643588 Query 564 TAGCCACGGCCGCCATCATTCTAACACGGGTTCCCTTGAGCGTGATGAGGTCTTCGTCCC 623 ||| ||| | || || || || ||||| || || | ||||| ||||| || || | || Sbjct 27643589 TAGTCACCGTCGTCACCACTCAAACACAGGGTCGTTAGAGCGAGATGAAGTGTTTATTCC 27643648 Query 624 TAAGAAAAAATCTAGTATCCCATGGTACTCCAAATACCTGAACAATCCACCAGGCCGGGT 683 ||| ||| | | || |||||||||||||| ||| | ||||| ||||||||| |||| Sbjct 27643649 CAAGCCTAAAACCAAAATGCCATGGTACTCCAAGTACTTCAACAACCCACCAGGCAGGGT 27643708 Query 684 GGTCACACTAGCAATCACACTGACTCTAGGCTGGCCTCTCTACCTAACTCTTAATGTTTC 743 | || || |||| || | |||||| ||||| | ||| | | | |||||||| Sbjct 27643709 CCTTACTCTTTTGGTCACTCTCATTCTAGGTTGGCCCTTGTACTTGGCCTTCAATGTTTC 27643768 Query 744 AGGCAGGCCATATGATCGGTTTGCAAGCCACTATAACCCTTACGGCCCCATCTACACAGA 803 |||| | || ||||| || |||||| |||||||| | || || |||||||| || | | Sbjct 27643769 AGGCCGTCCCTATGACCGATTTGCATGCCACTATGATCCCTATGGCCCCATTTATTCTGT 27643828 Query 804 TCGCCAGAGATTCCAAATATACATTTCTGATGCTGGTGTTCTTGCTGTCTCTTATGGGCT 863 ||| | ||| | |||||||| || || ||||||||| | |||| | | |||| | ||| Sbjct 27643829 TCGGGAAAGACTTCAAATATATATCTCAGATGCTGGTATCTTTGCCGCCACTTACGTGCT 27643888 Query 864 CTACCGTCTTGCCATGGTGAAAGGACTTATGTGGGTTATATGCATTTACGGAGTACCATT 923 ||| || ||| |||| |||||||| ||| || |||| |||| || || ||||| Sbjct 27643889 TTACAGTGCTGCAATGGCAAAAGGACTGGCTTGGCTTGTATGTGTTTATGGGGTGCCATT 27643948 Query 924 GCTGATCGTGAATGGGTTTTTGGTGTTGATCACGTTTCTGCAACACACTCACCCATCATT 983 ||| || || ||||| ||| | || |||||| | |||| || |||||||| ||||| Sbjct 27643949 GCTCATAGTCAATGGCTTTCTTGTAACGATCACATACTTGCAGCATACTCACCCTTCATT 27644008 Query 984 GCCCCATTATGATTCCTCCGAGTGGGACTGGTTGAGAGGAGCTTTGGCAACTGTTGACAG 1043 ||| || || || || || |||||||||||| ||| ||||| |||||||| | ||||| Sbjct 27644009 GCCACACTACGACTCATCGGAGTGGGACTGGCTGAAGGGAGCATTGGCAACAGCAGACAG 27644068 Query 1044 AGATTATGGAATCTTGAACAAGATTTTCCACAACATCACAGATACTCATGTGGCACACCA 1103 ||||||||| | |||| ||| ||||||||||||||||||| || |||||||| ||||| Sbjct 27644069 AGATTATGGGGTGCTGAATAAGGTTTTCCACAACATCACAGACACGCATGTGGCTCACCA 27644128 Query 1104 TTTGTTCTCAACCATGCCGCATTATCATGCAATGGAAGCTACAAAGGCGATCAAGCCAAT 1163 | | ||||| || ||||| ||||| ||||||||||| || || || || ||||||||||| Sbjct 27644129 TCTCTTCTCTACAATGCCTCATTACCATGCAATGGAGGCCACCAAAGCAATCAAGCCAAT 27644188 Query 1164 TTTGGGAGATTATTATCAGTTTGATGGCACACCGGTTTATAAAGCAATGTGGAGGGAGGC 1223 |||| || || || | ||||||||||||| | |||| |||||||||||||||||||| Sbjct 27644189 ACTGGGTGAGTACTACCGGTTTGATGGCACATCATTTTACAAAGCAATGTGGAGGGAGGC 27644248 Query 1224 AAAGGAGTGTCTTTATGTTGAACCAGATGAAGGTGGGCAGAGCAAAGGTGTGTTCTGGTA 1283 || ||||| |||||||||| || || || || | | |||||||| ||||||||||| Sbjct 27644249 TAAAGAGTGCATTTATGTTGAGCCGGACGAGGGGGCCCCTAGCAAAGGAGTGTTCTGGTA 27644308 Query 1284 CAACAACAAGCTGTGATG 1301 | | || ||||||||||| Sbjct 27644309 CCAGAAAAAGCTGTGATG 27644326 Score = 37.4 bits (40), Expect = 4.6 Identities = 31/37 (84%), Gaps = 1/37 (3%) Strand=Plus/Minus Query 522 TCTCCACTC-CTTTCTTCTTGTCCCTTACTTCTCCTG 557 |||||||| |||| ||| | ||||||||||||| || Sbjct 5067437 TCTCCACTTTCTTTTTTCCTTTCCCTTACTTCTCTTG 5067401 Score = 37.4 bits (40), Expect = 4.6 Identities = 78/114 (68%), Gaps = 7/114 (6%) Strand=Plus/Plus Query 1031 CAACTGTTGACAGAGATTATGGAATCTTGAACAAGATTTTCCACAACATCACAGATACTC 1090 |||| ||||| | ||||||||||| || || || || ||| | ||| | || | Sbjct 7007625 CAACAGTTGATCGTGATTATGGAATTTTCAATAACATCCACCATGATATC---GGCACCC 7007681 Query 1091 ATGTGGCACACCATTTGTT--CTCAACCATGCCGCATTATCATGCAATGGAAGC 1142 |||| ||||||| | || ||||| || || || || ||| | ||||||| Sbjct 7007682 ATGTTATACACCATCTCTTCCCTCAA--ATCCCACACTACCATCTAGTGGAAGC 7007733 >Query1 on lcl|Jr6D| Query1 on lcl|Jr6D Length=37991167 Score = 44.6 bits (48), Expect = 0.031 Identities = 27/29 (93%), Gaps = 0/29 (0%) Strand=Plus/Minus Query 1264 AGCAAAGGTGTGTTCTGGTACAACAACAA 1292 ||||||||||| |||||||||||||||| Sbjct 32290305 AGCAAAGGTGTCGTCTGGTACAACAACAA 32290277 Score = 37.4 bits (40), Expect = 4.6 Identities = 28/32 (88%), Gaps = 1/32 (3%) Strand=Plus/Minus Query 525 CCACTCCTTTCTTCTTGTCCCTTACTTCTCCT 556 |||||||||||||||| | |||| ||||| || Sbjct 4518651 CCACTCCTTTCTTCTTCTTCCTT-CTTCTTCT 4518621 Score = 37.4 bits (40), Expect = 4.6 Identities = 28/32 (88%), Gaps = 1/32 (3%) Strand=Plus/Minus Query 525 CCACTCCTTTCTTCTTGTCCCTTACTTCTCCT 556 |||||||||||||||| | |||| ||||| || Sbjct 4535570 CCACTCCTTTCTTCTTCTTCCTT-CTTCTTCT 4535540 Score = 37.4 bits (40), Expect = 4.6 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Plus Query 813 ATTCCAAATATACATTTCTGATGCT 837 ||||||||| |||||||||||| || Sbjct 21891900 ATTCCAAATCTACATTTCTGATTCT 21891924 >Query1 on lcl|Jr4S| Query1 on lcl|Jr4S Length=30027985 Score = 41.0 bits (44), Expect = 0.37 Identities = 32/37 (86%), Gaps = 1/37 (3%) Strand=Plus/Plus Query 1324 TTCGAGATTTTCAGATTCTTGTTAGAATATTAGTATT 1360 ||||| ||||| || || |||||||||||||| |||| Sbjct 3422494 TTCGA-ATTTTTAGCTTTTTGTTAGAATATTATTATT 3422529 Score = 39.2 bits (42), Expect = 1.3 Identities = 29/34 (85%), Gaps = 0/34 (0%) Strand=Plus/Plus Query 1222 GCAAAGGAGTGTCTTTATGTTGAACCAGATGAAG 1255 ||||||||||||||||| | ||| |||||||| Sbjct 25237981 GCAAAGGAGTGTCTTTAAGACAAACTAGATGAAG 25238014 Score = 37.4 bits (40), Expect = 4.6 Identities = 34/42 (81%), Gaps = 1/42 (2%) Strand=Plus/Minus Query 1319 GTTGGTTCGAGATTTTCAGATTCTTGTTAGAATATTAGTATT 1360 |||| | |||||| | | ||| |||||||||||||| |||| Sbjct 28936291 GTTGAGTTGAGATTATAA-ATTATTGTTAGAATATTATTATT 28936251 >Query1 on lcl|Jr3S| Query1 on lcl|Jr3S Length=28458890 Score = 41.0 bits (44), Expect = 0.37 Identities = 22/22 (100%), Gaps = 0/22 (0%) Strand=Plus/Plus Query 118 GCTTCTATATTTTCTCAGGTTG 139 |||||||||||||||||||||| Sbjct 22633854 GCTTCTATATTTTCTCAGGTTG 22633875 >Query1 on lcl|Jr2D| Query1 on lcl|Jr2D Length=43955564 Score = 41.0 bits (44), Expect = 0.37 Identities = 34/42 (81%), Gaps = 0/42 (0%) Strand=Plus/Minus Query 70 gagagagagagagagagagagagagaTTCATTGAAGTTCAAG 111 ||||||||||||||||||| ||| |||||||||||| Sbjct 17834335 GAGAGAGAGAGAGAGAGAGCAGTTGATCATTTGAAGTTCAAG 17834294 Score = 37.4 bits (40), Expect = 4.6 Identities = 44/57 (77%), Gaps = 2/57 (4%) Strand=Plus/Plus Query 922 TTGCTGATCGTGAATGGGTTTTTGGTGTTGATCACGTTTCTGCAACACACTCACCCA 978 |||||| | ||| ||||||| |||||||| || | ||||| || |||| ||||| Sbjct 6797900 TTGCTGTTGCTGAGAGGGTTTT-GGTGTTGAACAGGATTCTG-AATTCACTGACCCA 6797954 Score = 37.4 bits (40), Expect = 4.6 Identities = 25/27 (93%), Gaps = 1/27 (4%) Strand=Plus/Plus Query 822 ATACATT-TCTGATGCTGGTGTTCTTG 847 ||| ||| ||||||||||||||||||| Sbjct 12166267 ATATATTGTCTGATGCTGGTGTTCTTG 12166293 Score = 37.4 bits (40), Expect = 4.6 Identities = 22/23 (96%), Gaps = 0/23 (0%) Strand=Plus/Minus Query 1411 TTCTACTTGTGCTTTCCAATAAT 1433 ||||||||||| ||||||||||| Sbjct 17111950 TTCTACTTGTGATTTCCAATAAT 17111928 >Query1 on lcl|Jr8D| Query1 on lcl|Jr8D Length=35197335 Score = 39.2 bits (42), Expect = 1.3 Identities = 27/30 (90%), Gaps = 2/30 (7%) Strand=Plus/Minus Query 1121 CGCATTATC--ATGCAATGGAAGCTACAAA 1148 ||||||||| ||||| ||||||||||||| Sbjct 33655531 CGCATTATCCCATGCATTGGAAGCTACAAA 33655502 Score = 37.4 bits (40), Expect = 4.6 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Plus Query 451 GTCATAGCTCATGAGTGTGGACACC 475 ||||||||||| |||| |||||||| Sbjct 31296420 GTCATAGCTCAAGAGTTTGGACACC 31296444 >Query1 on lcl|Jr6S| Query1 on lcl|Jr6S Length=24894769 Score = 39.2 bits (42), Expect = 1.3 Identities = 24/26 (92%), Gaps = 0/26 (0%) Strand=Plus/Plus Query 1053 AATCTTGAACAAGATTTTCCACAACA 1078 ||| |||||||||||| ||||||||| Sbjct 6615473 AATGTTGAACAAGATTATCCACAACA 6615498 >Query1 on lcl|Jr4D| Query1 on lcl|Jr4D Length=35878018 Score = 39.2 bits (42), Expect = 1.3 Identities = 34/41 (83%), Gaps = 1/41 (2%) Strand=Plus/Minus Query 1473 CATTTTATGTTCTGATATGAGTATTGTTTC-TCGATAAAAA 1512 ||||||| || | |||||||||||||| | || ||||||| Sbjct 34517619 CATTTTACTTTATAATATGAGTATTGTTACATCTATAAAAA 34517579 >Query1 on lcl|Jr3D| Query1 on lcl|Jr3D Length=38540051 Score = 39.2 bits (42), Expect = 1.3 Identities = 21/21 (100%), Gaps = 0/21 (0%) Strand=Plus/Plus Query 993 TGATTCCTCCGAGTGGGACTG 1013 ||||||||||||||||||||| Sbjct 3085485 TGATTCCTCCGAGTGGGACTG 3085505 Score = 37.4 bits (40), Expect = 4.6 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Minus Query 1475 TTTTATGTTCTGATATGAGTATTGT 1499 || ||| |||||||||||||||||| Sbjct 24329811 TTGTATTTTCTGATATGAGTATTGT 24329787 >Query1 on lcl|Jr1D| Query1 on lcl|Jr1D Length=51893103 Score = 39.2 bits (42), Expect = 1.3 Identities = 28/31 (90%), Gaps = 1/31 (3%) Strand=Plus/Plus Query 522 TCTCCACTCC-TTTCTTCTTGTCCCTTACTT 551 ||||| |||| |||||| ||||||||||||| Sbjct 2889382 TCTCCTCTCCCTTTCTTTTTGTCCCTTACTT 2889412 >Query1 on lcl|JrScfU0004| Query1 on lcl|JrScfU0004 Length=89337 Score = 37.4 bits (40), Expect = 4.6 Identities = 34/42 (81%), Gaps = 1/42 (2%) Strand=Plus/Plus Query 1319 GTTGGTTCGAGATTTTCAGATTCTTGTTAGAATATTAGTATT 1360 |||| | |||||| | | ||| |||||||||||||| |||| Sbjct 55189 GTTGAGTTGAGATTATAA-ATTATTGTTAGAATATTATTATT 55229 >Query1 on lcl|Jr7S| Query1 on lcl|Jr7S Length=22705590 Score = 37.4 bits (40), Expect = 4.6 Identities = 31/37 (84%), Gaps = 1/37 (3%) Strand=Plus/Minus Query 521 TTCTCCACTCCTTTCTTCTTGTCC-CTTACTTCTCCT 556 ||||| |||||||||||| ||| | |||||||||| Sbjct 19407939 TTCTCTGCTCCTTTCTTCTCCTCCTCCTACTTCTCCT 19407903 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 802004499000 Database: JrSerr_genome.fa Posted date: Apr 26, 2019 2:59 PM Number of letters in database: 534,671,929 Number of sequences in database: 73 Matrix: blastn matrix 2 -3 Gap Penalties: Existence: 5, Extension: 2