BLAST Results
BLASTN 2.2.28+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: JrSerr_genome.fa 73 sequences; 534,671,929 total letters Query= 1 Length=23 Score E Sequences producing significant alignments: (Bits) Value lcl|Jr1D 42.8 2e-04 lcl|Jr6D 31.9 0.39 lcl|Jr7S 30.1 1.4 lcl|Jr4S 30.1 1.4 lcl|Jr8D 28.3 4.7 lcl|Jr6S 28.3 4.7 lcl|Jr5S 28.3 4.7 lcl|Jr5D 28.3 4.7 lcl|Jr4D 28.3 4.7 lcl|Jr2S 28.3 4.7 lcl|Jr1S 28.3 4.7 >1 on lcl|Jr1D| 1 on lcl|Jr1D Length=51893103 Score = 42.8 bits (46), Expect = 2e-04 Identities = 23/23 (100%), Gaps = 0/23 (0%) Strand=Plus/Minus Query 1 CTGCTAAATGAAATTCCCATCTG 23 ||||||||||||||||||||||| Sbjct 36079325 CTGCTAAATGAAATTCCCATCTG 36079303 Score = 28.3 bits (30), Expect = 4.7 Identities = 17/18 (94%), Gaps = 0/18 (0%) Strand=Plus/Plus Query 5 TAAATGAAATTCCCATCT 22 ||||||||||||||| || Sbjct 25874032 TAAATGAAATTCCCAACT 25874049 Score = 28.3 bits (30), Expect = 4.7 Identities = 15/15 (100%), Gaps = 0/15 (0%) Strand=Plus/Minus Query 7 AATGAAATTCCCATC 21 ||||||||||||||| Sbjct 36394239 AATGAAATTCCCATC 36394225 >1 on lcl|Jr6D| 1 on lcl|Jr6D Length=37991167 Score = 31.9 bits (34), Expect = 0.39 Identities = 17/17 (100%), Gaps = 0/17 (0%) Strand=Plus/Plus Query 6 AAATGAAATTCCCATCT 22 ||||||||||||||||| Sbjct 1795429 AAATGAAATTCCCATCT 1795445 >1 on lcl|Jr7S| 1 on lcl|Jr7S Length=22705590 Score = 30.1 bits (32), Expect = 1.4 Identities = 16/16 (100%), Gaps = 0/16 (0%) Strand=Plus/Minus Query 6 AAATGAAATTCCCATC 21 |||||||||||||||| Sbjct 11591397 AAATGAAATTCCCATC 11591382 Score = 28.3 bits (30), Expect = 4.7 Identities = 15/15 (100%), Gaps = 0/15 (0%) Strand=Plus/Minus Query 4 CTAAATGAAATTCCC 18 ||||||||||||||| Sbjct 10413268 CTAAATGAAATTCCC 10413254 >1 on lcl|Jr4S| 1 on lcl|Jr4S Length=30027985 Score = 30.1 bits (32), Expect = 1.4 Identities = 16/16 (100%), Gaps = 0/16 (0%) Strand=Plus/Plus Query 8 ATGAAATTCCCATCTG 23 |||||||||||||||| Sbjct 2003838 ATGAAATTCCCATCTG 2003853 Score = 28.3 bits (30), Expect = 4.7 Identities = 15/15 (100%), Gaps = 0/15 (0%) Strand=Plus/Minus Query 6 AAATGAAATTCCCAT 20 ||||||||||||||| Sbjct 8093025 AAATGAAATTCCCAT 8093011 Score = 28.3 bits (30), Expect = 4.7 Identities = 18/20 (90%), Gaps = 0/20 (0%) Strand=Plus/Minus Query 2 TGCTAAATGAAATTCCCATC 21 |||| || |||||||||||| Sbjct 29710079 TGCTTAAAGAAATTCCCATC 29710060 >1 on lcl|Jr8D| 1 on lcl|Jr8D Length=35197335 Score = 28.3 bits (30), Expect = 4.7 Identities = 15/15 (100%), Gaps = 0/15 (0%) Strand=Plus/Minus Query 2 TGCTAAATGAAATTC 16 ||||||||||||||| Sbjct 24836908 TGCTAAATGAAATTC 24836894 >1 on lcl|Jr6S| 1 on lcl|Jr6S Length=24894769 Score = 28.3 bits (30), Expect = 4.7 Identities = 17/18 (94%), Gaps = 0/18 (0%) Strand=Plus/Minus Query 6 AAATGAAATTCCCATCTG 23 ||||| |||||||||||| Sbjct 15519591 AAATGCAATTCCCATCTG 15519574 >1 on lcl|Jr5S| 1 on lcl|Jr5S Length=32184663 Score = 28.3 bits (30), Expect = 4.7 Identities = 17/18 (94%), Gaps = 0/18 (0%) Strand=Plus/Minus Query 6 AAATGAAATTCCCATCTG 23 ||||||||||| |||||| Sbjct 1413260 AAATGAAATTCACATCTG 1413243 Score = 28.3 bits (30), Expect = 4.7 Identities = 15/15 (100%), Gaps = 0/15 (0%) Strand=Plus/Minus Query 6 AAATGAAATTCCCAT 20 ||||||||||||||| Sbjct 1649328 AAATGAAATTCCCAT 1649314 >1 on lcl|Jr5D| 1 on lcl|Jr5D Length=33932481 Score = 28.3 bits (30), Expect = 4.7 Identities = 15/15 (100%), Gaps = 0/15 (0%) Strand=Plus/Minus Query 2 TGCTAAATGAAATTC 16 ||||||||||||||| Sbjct 4416779 TGCTAAATGAAATTC 4416765 Score = 28.3 bits (30), Expect = 4.7 Identities = 15/15 (100%), Gaps = 0/15 (0%) Strand=Plus/Plus Query 5 TAAATGAAATTCCCA 19 ||||||||||||||| Sbjct 33519157 TAAATGAAATTCCCA 33519171 >1 on lcl|Jr4D| 1 on lcl|Jr4D Length=35878018 Score = 28.3 bits (30), Expect = 4.7 Identities = 15/15 (100%), Gaps = 0/15 (0%) Strand=Plus/Plus Query 6 AAATGAAATTCCCAT 20 ||||||||||||||| Sbjct 12552650 AAATGAAATTCCCAT 12552664 Score = 28.3 bits (30), Expect = 4.7 Identities = 17/18 (94%), Gaps = 0/18 (0%) Strand=Plus/Plus Query 5 TAAATGAAATTCCCATCT 22 |||||||||||||| ||| Sbjct 31125826 TAAATGAAATTCCCTTCT 31125843 >1 on lcl|Jr2S| 1 on lcl|Jr2S Length=37319718 Score = 28.3 bits (30), Expect = 4.7 Identities = 17/18 (94%), Gaps = 0/18 (0%) Strand=Plus/Minus Query 2 TGCTAAATGAAATTCCCA 19 || ||||||||||||||| Sbjct 34797735 TGATAAATGAAATTCCCA 34797718 >1 on lcl|Jr1S| 1 on lcl|Jr1S Length=29818788 Score = 28.3 bits (30), Expect = 4.7 Identities = 15/15 (100%), Gaps = 0/15 (0%) Strand=Plus/Minus Query 8 ATGAAATTCCCATCT 22 ||||||||||||||| Sbjct 10584974 ATGAAATTCCCATCT 10584960 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1604011407 Database: JrSerr_genome.fa Posted date: Apr 26, 2019 2:59 PM Number of letters in database: 534,671,929 Number of sequences in database: 73 Matrix: blastn matrix 2 -3 Gap Penalties: Existence: 5, Extension: 2