BLAST Results
BLASTN 2.2.28+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jm3101_genome.fa 154 sequences; 527,895,757 total letters Query= 1 Length=250 Score E Sequences producing significant alignments: (Bits) Value lcl|Jm2D 95.1 3e-18 lcl|Jm6D 62.6 2e-08 lcl|Jm2S 60.8 6e-08 lcl|Jm1D 41.0 0.055 lcl|Jm8S 35.6 2.3 lcl|Jm7D 35.6 2.3 lcl|Jm5S 35.6 2.3 lcl|Jm8D 33.7 8.1 lcl|Jm6S 33.7 8.1 lcl|Jm5D 33.7 8.1 lcl|Jm4S 33.7 8.1 lcl|Jm4D 33.7 8.1 lcl|Jm3S 33.7 8.1 lcl|Jm3D 33.7 8.1 >1 on lcl|Jm2D| 1 on lcl|Jm2D Length=43614719 Score = 95.1 bits (104), Expect = 3e-18 Identities = 69/80 (86%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 171 GTGAAGTATTTTAGAGTTTTGGTGTGTGGAGGAGATGGAACAGTTGCATGGGTGCTTGAT 230 || || |||||||| |||||||| ||||| |||||||| || ||||||||||| |||||| Sbjct 40246867 GTAAAATATTTTAGGGTTTTGGTTTGTGGTGGAGATGGCACCGTTGCATGGGTCCTTGAT 40246926 Query 231 GCTATTGAGAAGCGCAATTT 250 || ||||||||| |||||| Sbjct 40246927 GCGATTGAGAAGTACAATTT 40246946 Score = 33.7 bits (36), Expect = 8.1 Identities = 18/18 (100%), Gaps = 0/18 (0%) Strand=Plus/Minus Query 174 AAGTATTTTAGAGTTTTG 191 |||||||||||||||||| Sbjct 32821679 AAGTATTTTAGAGTTTTG 32821662 >1 on lcl|Jm6D| 1 on lcl|Jm6D Length=38364907 Score = 62.6 bits (68), Expect = 2e-08 Identities = 85/116 (73%), Gaps = 2/116 (2%) Strand=Plus/Minus Query 1 TTGATTTGCCCCCAGATGCAAGACCGCTTTTAGTCTTTATTAACGCCAAAAGCGGAGGTC 60 |||||||||| ||||||||||| ||| | ||||| || || ||| || || || | || Sbjct 8329629 TTGATTTGCCTCCAGATGCAAGGCCGTTGTTAGTTTTCATCAACAAGAAGAGTGGGGCTC 8329570 Query 61 AACTCGGTCCTTTTCTT-CACAGGAGACTTAATATGCTATTGAATCCAGTACAGGT 115 | | || || ||| ||| | || | |||||||| |||||||| || ||||| Sbjct 8329569 AGCATGGGGATTCACTTGCAC-GACGATTAAATATGCTTTTGAATCCTGTTCAGGT 8329515 Score = 41.0 bits (44), Expect = 0.055 Identities = 31/37 (84%), Gaps = 0/37 (0%) Strand=Plus/Minus Query 31 TAGTCTTTATTAACGCCAAAAGCGGAGGTCAACTCGG 67 ||||||| ||||| ||||||||||||| || || || Sbjct 35487997 TAGTCTTCATTAATTCCAAAAGCGGAGGCCAGCTGGG 35487961 Score = 33.7 bits (36), Expect = 8.1 Identities = 31/38 (82%), Gaps = 5/38 (13%) Strand=Plus/Plus Query 177 TATTTTAGAGTTTTGGTGTGTGGAGGAGATGGAACAGT 214 ||||||||||||||| | | ||||||| ||||||| Sbjct 7476808 TATTTTAGAGTTTTGATTT----AGGAGAT-GAACAGT 7476840 Score = 33.7 bits (36), Expect = 8.1 Identities = 20/21 (95%), Gaps = 0/21 (0%) Strand=Plus/Minus Query 143 AGACGCTGGTTTAGACCTATG 163 || |||||||||||||||||| Sbjct 20348946 AGGCGCTGGTTTAGACCTATG 20348926 >1 on lcl|Jm2S| 1 on lcl|Jm2S Length=34707362 Score = 60.8 bits (66), Expect = 6e-08 Identities = 77/106 (73%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 14 AGATGCAAGACCGCTTTTAGTCTTTATTAACGCCAAAAGCGGAGGTCAACTCGGTCCTTT 73 |||||||||||| | || ||||||| || |||| || | | |||||| | | Sbjct 32076100 AGATGCAAGACCTTTGTTGGTCTTTAAAAATGCCAGGAGTGCATGTCAACATGTATTTAG 32076159 Query 74 TCTTCACAGGAGACTTAATATGCTATTGAATCCAGTACAGGTCTTT 119 ||||| |||||||| || |||||||| || || ||||| || ||| Sbjct 32076160 TCTTCGAAGGAGACTCAACATGCTATTAAACCCTGTACATGTATTT 32076205 >1 on lcl|Jm1D| 1 on lcl|Jm1D Length=49856174 Score = 41.0 bits (44), Expect = 0.055 Identities = 27/29 (93%), Gaps = 1/29 (3%) Strand=Plus/Minus Query 203 AGATGGAACAGTT-GCATGGGTGCTTGAT 230 ||||||||||||| ||||||||| ||||| Sbjct 47239857 AGATGGAACAGTTTGCATGGGTGATTGAT 47239829 Score = 33.7 bits (36), Expect = 8.1 Identities = 21/23 (91%), Gaps = 0/23 (0%) Strand=Plus/Plus Query 228 GATGCTATTGAGAAGCGCAATTT 250 |||||||||||||| | |||||| Sbjct 35867546 GATGCTATTGAGAATCTCAATTT 35867568 >1 on lcl|Jm8S| 1 on lcl|Jm8S Length=19962766 Score = 35.6 bits (38), Expect = 2.3 Identities = 22/24 (92%), Gaps = 0/24 (0%) Strand=Plus/Plus Query 71 TTTTCTTCACAGGAGACTTAATAT 94 |||||||||||||| |||||||| Sbjct 8999368 TTTTCTTCACAGGATTCTTAATAT 8999391 Score = 35.6 bits (38), Expect = 2.3 Identities = 27/31 (87%), Gaps = 1/31 (3%) Strand=Plus/Minus Query 183 AGAGTTTTGGTGTGTGGAGGAGATGGAACAG 213 |||| | ||||| |||||||||||||| ||| Sbjct 18147914 AGAGGTATGGTG-GTGGAGGAGATGGAGCAG 18147885 >1 on lcl|Jm7D| 1 on lcl|Jm7D Length=26765518 Score = 35.6 bits (38), Expect = 2.3 Identities = 24/26 (92%), Gaps = 1/26 (4%) Strand=Plus/Plus Query 167 CAAAGTGAA-GTATTTTAGAGTTTTG 191 ||| ||||| |||||||||||||||| Sbjct 9968760 CAATGTGAAAGTATTTTAGAGTTTTG 9968785 Score = 35.6 bits (38), Expect = 2.3 Identities = 24/27 (89%), Gaps = 0/27 (0%) Strand=Plus/Minus Query 181 TTAGAGTTTTGGTGTGTGGAGGAGATG 207 |||| || ||||||| ||||||||||| Sbjct 15187879 TTAGGGTCTTGGTGTATGGAGGAGATG 15187853 Score = 33.7 bits (36), Expect = 8.1 Identities = 18/18 (100%), Gaps = 0/18 (0%) Strand=Plus/Plus Query 69 CCTTTTCTTCACAGGAGA 86 |||||||||||||||||| Sbjct 19287572 CCTTTTCTTCACAGGAGA 19287589 >1 on lcl|Jm5S| 1 on lcl|Jm5S Length=32113326 Score = 35.6 bits (38), Expect = 2.3 Identities = 21/22 (95%), Gaps = 0/22 (0%) Strand=Plus/Minus Query 169 AAGTGAAGTATTTTAGAGTTTT 190 ||||| |||||||||||||||| Sbjct 14106355 AAGTGTAGTATTTTAGAGTTTT 14106334 >1 on lcl|Jm8D| 1 on lcl|Jm8D Length=36225362 Score = 33.7 bits (36), Expect = 8.1 Identities = 24/27 (89%), Gaps = 2/27 (7%) Strand=Plus/Plus Query 197 TGGAGGAGATGGAACAGT--TGCATGG 221 || ||||||||||||||| ||||||| Sbjct 4503591 TGCAGGAGATGGAACAGTAGTGCATGG 4503617 >1 on lcl|Jm6S| 1 on lcl|Jm6S Length=22373256 Score = 33.7 bits (36), Expect = 8.1 Identities = 24/28 (86%), Gaps = 0/28 (0%) Strand=Plus/Plus Query 49 AAAGCGGAGGTCAACTCGGTCCTTTTCT 76 |||| |||||||||||| || |||||| Sbjct 1528880 AAAGAGGAGGTCAACTCCATCTTTTTCT 1528907 Score = 33.7 bits (36), Expect = 8.1 Identities = 20/21 (95%), Gaps = 0/21 (0%) Strand=Plus/Plus Query 97 TATTGAATCCAGTACAGGTCT 117 |||||||||||| |||||||| Sbjct 5061370 TATTGAATCCAGAACAGGTCT 5061390 >1 on lcl|Jm5D| 1 on lcl|Jm5D Length=35798223 Score = 33.7 bits (36), Expect = 8.1 Identities = 18/18 (100%), Gaps = 0/18 (0%) Strand=Plus/Minus Query 181 TTAGAGTTTTGGTGTGTG 198 |||||||||||||||||| Sbjct 10717402 TTAGAGTTTTGGTGTGTG 10717385 >1 on lcl|Jm4S| 1 on lcl|Jm4S Length=27577207 Score = 33.7 bits (36), Expect = 8.1 Identities = 21/23 (91%), Gaps = 0/23 (0%) Strand=Plus/Minus Query 197 TGGAGGAGATGGAACAGTTGCAT 219 ||||||||||||||||| | ||| Sbjct 5135061 TGGAGGAGATGGAACAGATCCAT 5135039 >1 on lcl|Jm4D| 1 on lcl|Jm4D Length=35629462 Score = 33.7 bits (36), Expect = 8.1 Identities = 20/21 (95%), Gaps = 0/21 (0%) Strand=Plus/Plus Query 97 TATTGAATCCAGTACAGGTCT 117 |||||||||||| |||||||| Sbjct 8767107 TATTGAATCCAGAACAGGTCT 8767127 >1 on lcl|Jm3S| 1 on lcl|Jm3S Length=27832763 Score = 33.7 bits (36), Expect = 8.1 Identities = 35/45 (78%), Gaps = 1/45 (2%) Strand=Plus/Minus Query 88 TTAATATGCTATTGAATCCAGTACAGGTCTTTGAACTTGGCTCTT 132 |||||| ||||||||||| | | |||| |||||||||||| Sbjct 15971982 TTAATA-GCTATTGAATCTTATCCCATTCTTCCAACTTGGCTCTT 15971939 >1 on lcl|Jm3D| 1 on lcl|Jm3D Length=39900371 Score = 33.7 bits (36), Expect = 8.1 Identities = 21/23 (91%), Gaps = 0/23 (0%) Strand=Plus/Minus Query 148 CTGGTTTAGACCTATGTAGCAAA 170 ||||||||||||||||| |||| Sbjct 25688127 CTGGTTTAGACCTATGTTACAAA 25688105 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 116663975311 Database: Jm3101_genome.fa Posted date: Apr 26, 2019 3:00 PM Number of letters in database: 527,895,757 Number of sequences in database: 154 Matrix: blastn matrix 2 -3 Gap Penalties: Existence: 5, Extension: 2