BLAST Results




BLASTP 2.2.28+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.


Reference for
composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: test_aa_db
           214 sequences; 49,279 total letters



Query= 
Length=148
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  gi|6694212|gb|AAF25181.1|AF182353_1 (AF182353) NADH dehydrogena...  21.2    1.6  
  gi|6694284|gb|AAF25201.1|AF196839_1 (AF196839) coat protein [Pa...  19.6    5.9  


> Query1 on gi|6694212|gb|AAF25181.1|AF182353_1 (AF182353) NADH dehydrogenase 
[Eremitis sp. Clark and Zhang 1343]
Length=702

 Score = 21.2 bits (43),  Expect = 1.6, Method: Composition-based stats.
 Identities = 9/33 (27%), Positives = 18/33 (55%), Gaps = 0/33 (0%)

Query  26   AATAGGSLLVLSGLILAGTVIALTVATPLFVIF  58
            +A    + +V +G+ L   +  L ++ PL +IF
Sbjct  253  SALIHAAXMVAAGIFLLARLFPLFISLPLIMIF  285


> Query1 on gi|6694284|gb|AAF25201.1|AF196839_1 (AF196839) coat protein [Papaya 
ringspot virus]
Length=292

 Score = 19.6 bits (39),  Expect = 5.9, Method: Compositional matrix adjust.
 Identities = 9/37 (24%), Positives = 17/37 (46%), Gaps = 0/37 (0%)

Query  4    HQQQSQRPDLQPRSHQVVKAATAATAGGSLLVLSGLI  40
            ++  S+ PD    +H  +KAA    A   +  + G +
Sbjct  229  YEVNSKTPDRAREAHMQMKAAALRNASRRMFGMDGSV  265



Lambda      K        H        a         alpha
   0.323    0.134    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 3545962


  Database: test_aa_db
    Posted date:  Jul 19, 2010  4:26 PM
  Number of letters in database: 49,279
  Number of sequences in database:  214



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40